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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0280500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0357) R2 : 0.0417
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.335 (0.0752) R2dN8 : 0.0539 R2N8 : 0.0417
σ : 0.673
deviance : 207.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.25 0.651 3.75 2.42 0.263 -1.69 -0.52 13.9 -0.343 12.5 30.09 1487 -- --
198.79 0.662 4.02 0.0663 0.324 -0.547 -0.469 -- -0.347 12.5 30.09 1487 -- --
193.35 0.648 3.75 2.36 0.263 -1.67 -- 13.8 -0.349 12.1 30.2 1488 -- --
199.64 0.662 4.02 0.0492 0.327 -0.585 -- -- -0.35 12.4 30.3 765 -- --
197.72 0.655 3.77 2.29 -- -1.76 -- 14.3 -0.355 -- 30.2 1527 -- --
201.3 0.665 4.02 0.0403 0.285 -- -0.515 -- -0.327 12.2 -- -- -- --
202.4 0.666 4.02 0.0192 0.288 -- -- -- -0.33 11.8 -- -- -- --
205.28 0.667 4.03 0.0584 -- -0.285 -- -- -0.369 -- 30.2 826 -- --
199.45 0.658 4.03 -- 0.304 -0.597 -- -- -0.365 11.7 31.17 96 -- --
207.62 0.673 4.02 0.0108 -- -- -- -- -0.334 -- -- -- -- --
202.41 0.666 4.02 -- 0.288 -- -- -- -0.332 11.8 -- -- -- --
205.32 0.667 4.03 -- -- -0.53 -- -- -0.355 -- 31.49 106 -- --
207.63 0.673 4.02 -- -- -- -- -- -0.335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.98 atmosphere 1005 90 < th dose independent rect. 24 11
2 189.01 temperature 20 270 > th dose dependent rect. 5 3
3 189.07 atmosphere 1005 720 < th dose independent rect. 24 1
4 189.22 temperature 20 270 > th dose dependent rect. 6 1
5 189.24 temperature 20 270 > th dose dependent rect. 3 6
7 189.54 temperature 20 30 > th dose dependent rect. 5 6
9 189.57 temperature 10 720 > th dose dependent rect. 2 5
11 189.59 atmosphere 1005 270 < th dose independent rect. 22 12
16 189.70 atmosphere 1005 10 < th dose independent rect. 24 11
21 189.82 temperature 25 30 > th dose independent rect. 5 6
26 189.95 temperature 20 10 > th dose dependent rect. 3 8
33 190.06 atmosphere 1005 30 > th dose independent rect. 5 6
37 190.07 temperature 20 10 > th dose dependent rect. 1 10
48 190.28 temperature 25 270 > th dose independent rect. 6 2
55 190.35 temperature 30 720 < th dose dependent rect. 24 2
58 190.39 atmosphere 1005 270 < th dose independent sin 7 NA
63 190.46 wind 9 720 > th dose independent rect. 18 16
67 190.52 wind 9 4320 > th dose dependent rect. 12 2
70 190.59 temperature 30 10 < th dose independent rect. 11 18
84 190.71 temperature 15 30 > th dose dependent rect. 5 9
108 190.97 temperature 20 720 > th dose dependent rect. 23 8
115 191.03 wind 9 720 > th dose dependent rect. 18 16
118 191.06 atmosphere 1005 90 < th dose independent rect. 4 7
120 191.08 temperature 20 10 > th dose dependent rect. 19 16
137 191.23 wind 7 90 < th dose independent rect. 5 9
139 191.23 temperature 30 720 < th dose dependent rect. 24 8
152 191.31 radiation 30 10 < th dose independent rect. 5 6
154 191.32 atmosphere 995 10 > th dose dependent rect. 11 18
156 191.33 wind 3 720 > th dose independent rect. 2 2
157 191.33 wind 1 270 < th dose dependent rect. 2 1
160 191.33 temperature 10 720 > th dose dependent rect. 21 10
169 191.37 temperature 30 10 < th dose dependent rect. 24 13
174 191.39 temperature 25 4320 > th dose dependent rect. 3 5
177 191.40 atmosphere 1005 10 < th dose independent sin 6 NA
180 191.42 atmosphere 1000 30 > th dose dependent rect. 5 6
183 191.43 temperature 10 720 > th dose dependent rect. 23 8
186 191.47 temperature 25 10 > th dose dependent sin 8 NA
187 191.48 atmosphere 1005 270 > th dose independent rect. 5 2
188 191.48 temperature 30 1440 > th dose dependent rect. 12 1
196 191.50 temperature 20 10 > th dose dependent sin 6 NA
200 191.52 wind 3 4320 > th dose independent rect. 1 1
205 191.54 atmosphere 1005 10 < th dose independent rect. 4 7
207 191.54 radiation 30 30 < th dose independent rect. 20 15
210 191.56 atmosphere 1000 720 > th dose independent rect. 21 10
212 191.57 atmosphere 1000 10 > th dose independent rect. 20 15
213 191.58 atmosphere 1005 90 < th dose independent rect. 8 3
214 191.58 temperature 25 30 > th dose independent rect. 1 10
241 191.68 atmosphere 1000 90 > th dose independent rect. 12 23
250 191.72 temperature 30 270 < th dose dependent rect. 23 13
251 191.72 temperature 20 10 > th dose dependent rect. 21 14
266 191.77 wind 3 4320 < th dose independent rect. 1 1
267 191.77 wind 7 10 < th dose independent rect. 5 9
280 191.80 temperature 25 30 > th dose independent rect. 23 12
291 191.84 wind 9 10 < th dose dependent rect. 5 9
300 191.87 atmosphere 1000 720 > th dose independent rect. 19 14
305 191.88 wind 3 4320 < th dose independent rect. 23 8
338 191.96 wind 3 4320 > th dose independent rect. 23 8
350 191.98 temperature 30 1440 > th dose dependent rect. 12 3
358 192.00 temperature 30 720 < th dose independent rect. 24 10
362 192.03 wind 3 4320 > th dose independent rect. 1 6
363 192.03 wind 3 4320 < th dose independent rect. 1 6
365 192.03 wind 9 10 < th dose dependent rect. 5 13
372 192.06 temperature 30 1440 < th dose independent rect. 12 1
382 192.10 atmosphere 1010 10 < th dose dependent rect. 24 12
383 192.10 temperature 10 720 > th dose dependent rect. 19 14
394 192.13 temperature 30 1440 > th dose dependent rect. 10 5
401 192.15 temperature 30 1440 > th dose independent rect. 16 19
437 192.19 atmosphere 1000 720 > th dose independent rect. 19 12
442 192.21 wind 9 4320 > th dose independent rect. 13 1
458 192.24 temperature 30 1440 < th dose independent rect. 16 19
476 192.28 radiation 30 270 > th dose independent rect. 15 17
484 192.29 atmosphere 1005 10 > th dose dependent rect. 11 8
510 192.32 temperature 30 1440 > th dose dependent sin 3 NA
513 192.32 wind 1 10 > th dose dependent rect. 11 1
518 192.34 wind 3 30 > th dose independent rect. 11 1
566 192.39 wind 9 4320 > th dose independent rect. 11 3
569 192.39 atmosphere 1010 720 < th dose dependent rect. 24 1
572 192.39 temperature 30 1440 > th dose dependent rect. 12 23
592 192.41 atmosphere 1000 720 > th dose independent rect. 19 5
597 192.42 wind 1 1440 < th dose dependent rect. 17 4
628 192.45 temperature 30 1440 > th dose dependent no NA NA
763 192.47 atmosphere 1005 720 < th dose independent rect. 19 11
779 192.48 temperature 30 1440 > th dose dependent rect. 12 21
781 192.48 temperature 30 1440 > th dose dependent rect. 14 23
806 192.50 atmosphere 1005 270 > th dose independent rect. 3 6
807 192.50 atmosphere 1005 270 > th dose independent rect. 2 9
830 192.51 temperature 15 90 > th dose independent rect. 5 10
831 192.51 atmosphere 995 30 > th dose dependent rect. 11 1
873 192.53 atmosphere 1010 270 < th dose dependent rect. 21 13
917 192.60 wind 9 4320 < th dose independent rect. 13 1
953 192.65 temperature 30 1440 > th dose independent rect. 10 1
963 192.66 wind 1 43200 < th dose dependent rect. 2 1