Os11g0275400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os11g0275400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.67 | 0.238 | 10.5 | -0.177 | 0.636 | -0.63 | -0.129 | -0.578 | 0.127 | 0.744 | 78.76 | 1383 | -- | -- |
| 25.96 | 0.237 | 10.5 | -0.137 | 0.631 | -0.664 | -0.134 | -- | 0.128 | 0.719 | 78.83 | 1382 | -- | -- |
| 25.75 | 0.236 | 10.5 | -0.172 | 0.636 | -0.635 | -- | -0.587 | 0.128 | 0.747 | 78.87 | 1382 | -- | -- |
| 26.03 | 0.238 | 10.5 | -0.125 | 0.633 | -0.67 | -- | -- | 0.138 | 0.738 | 79 | 1382 | -- | -- |
| 36.04 | 0.28 | 10.5 | -0.0907 | -- | -0.417 | -- | 0.123 | 0.111 | -- | 77.79 | 9 | -- | -- |
| 31.31 | 0.262 | 10.5 | -0.164 | 0.61 | -- | -0.206 | -- | 0.106 | 0.566 | -- | -- | -- | -- |
| 31.49 | 0.263 | 10.5 | -0.156 | 0.611 | -- | -- | -- | 0.107 | 0.561 | -- | -- | -- | -- |
| 36.13 | 0.28 | 10.5 | -0.0955 | -- | -0.417 | -- | -- | 0.11 | -- | 77.8 | 9 | -- | -- |
| 26.44 | 0.239 | 10.5 | -- | 0.631 | -0.682 | -- | -- | 0.153 | 0.74 | 78.43 | 1382 | -- | -- |
| 54.9 | 0.346 | 10.5 | -0.135 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 32.14 | 0.265 | 10.5 | -- | 0.609 | -- | -- | -- | 0.125 | 0.549 | -- | -- | -- | -- |
| 36.37 | 0.281 | 10.5 | -- | -- | -0.419 | -- | -- | 0.121 | -- | 77.61 | 9 | -- | -- |
| 55.38 | 0.347 | 10.5 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 24.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 11 | 25.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 17 | 25.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 19 | 25.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 34 | 25.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 37 | 25.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 38 | 26.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 44 | 26.01 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 50 | 26.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 52 | 26.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 63 | 26.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 76 | 26.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 19 |
| 77 | 26.04 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 95 | 26.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 123 | 26.07 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 175 | 26.10 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 199 | 26.12 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 216 | 26.15 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 217 | 26.15 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 218 | 26.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 221 | 26.15 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 233 | 26.16 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 16 |
| 240 | 26.17 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 249 | 26.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 250 | 26.18 | humidity | 70 | 1440 | > th | dose dependent | sin | 1 | NA |
| 261 | 26.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 289 | 26.22 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 311 | 26.24 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 334 | 26.26 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 335 | 26.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 346 | 26.27 | humidity | 80 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 348 | 26.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 378 | 26.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 399 | 26.31 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 405 | 26.31 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 413 | 26.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 420 | 26.33 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 10 |
| 469 | 26.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 501 | 26.38 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 528 | 26.40 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 547 | 26.41 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 572 | 26.42 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 574 | 26.42 | humidity | 80 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 587 | 26.43 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 659 | 26.47 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 21 |
| 672 | 26.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 673 | 26.48 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 3 |
| 727 | 26.50 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 735 | 26.50 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 869 | 26.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 882 | 26.57 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 921 | 26.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 928 | 26.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 987 | 26.63 | humidity | 80 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 994 | 26.63 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |