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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0274700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0327) R2 : 0.0525
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.346 (0.0689) R2dN8 : 0.0678 R2N8 : 0.0525
σ : 0.616
deviance : 174.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.32 0.601 2.85 0.0546 0.0538 -0.401 0.0263 2.37 0.343 23.1 1 10 -- --
171.12 0.609 2.83 0.128 0.0591 -0.263 -0.188 -- 0.364 1.26 1.1 14 -- --
166.32 0.601 2.85 0.0538 0.0536 -0.401 -- 2.37 0.343 23 1.006 10 -- --
171.1 0.609 2.82 0.104 0.0334 -0.209 -- -- 0.379 22.6 1.5 14 -- --
166.5 0.601 2.85 0.0542 -- -0.409 -- 2.36 0.343 -- 1.005 10 -- --
172.65 0.616 2.83 0.167 0.113 -- -0.185 -- 0.362 2.84 -- -- -- --
172.77 0.616 2.83 0.171 0.112 -- -- -- 0.363 2.76 -- -- -- --
170.67 0.608 2.82 0.109 -- -0.251 -- -- 0.382 -- 1.5 33 -- --
170.92 0.609 2.83 -- 0.0226 -0.242 -- -- 0.361 23.8 1.593 32 -- --
173.5 0.615 2.83 0.176 -- -- -- -- 0.366 -- -- -- -- --
173.55 0.616 2.83 -- 0.115 -- -- -- 0.344 2.77 -- -- -- --
170.94 0.609 2.83 -- -- -0.27 -- -- 0.369 -- 1.585 33 -- --
174.31 0.616 2.83 -- -- -- -- -- 0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.98 wind 1.0 10 > th dose independent rect. 11 23
2 164.80 wind 1.0 30 < th dose independent rect. 24 3
3 164.83 wind 1.0 30 < th dose dependent rect. 23 4
6 164.92 wind 1.0 30 < th dose dependent rect. 17 10
12 165.01 wind 1.0 10 < th dose dependent rect. 2 1
13 165.06 wind 1.0 270 < th dose independent rect. 19 1
15 165.06 wind 1.0 270 < th dose dependent rect. 19 1
17 165.07 wind 9.0 4320 > th dose independent rect. 3 1
50 165.07 wind 9.0 4320 > th dose dependent rect. 3 1
85 165.17 wind 1.0 720 < th dose dependent rect. 17 1
86 165.18 wind 1.0 720 < th dose dependent rect. 17 3
102 165.30 temperature 25.0 30 > th dose dependent rect. 23 1
116 165.50 wind 1.0 30 < th dose dependent rect. 10 17
121 165.52 wind 1.0 10 < th dose independent rect. 15 12
126 165.54 wind 1.0 10 < th dose independent rect. 17 10
129 165.55 wind 1.0 10 < th dose independent rect. 21 6
137 165.61 wind 1.0 10 > th dose independent sin 10 NA
144 165.65 temperature 20.0 90 > th dose dependent rect. 1 2
154 165.70 wind 1.0 1440 > th dose independent rect. 19 1
169 165.87 wind 1.0 10 < th dose independent rect. 24 9
181 165.90 wind 1.0 10 < th dose independent rect. 24 7
188 165.93 wind 1.0 10 > th dose independent rect. 18 15
193 165.96 wind 1.0 30 > th dose independent rect. 3 23
211 166.05 wind 1.0 10 > th dose independent rect. 21 23
217 166.10 atmosphere 1005.0 90 < th dose independent rect. 20 4
218 166.10 wind 1.0 30 < th dose independent rect. 8 20
220 166.11 temperature 25.0 10 > th dose independent rect. 23 1
232 166.16 wind 9.0 4320 < th dose independent rect. 3 1
241 166.17 temperature 15.0 10 > th dose dependent rect. 2 1
245 166.20 wind 1.0 10 < th dose independent rect. 5 23
252 166.25 wind 1.0 10 < th dose independent sin 13 NA
256 166.26 humidity 90.0 10 > th dose independent rect. 2 1
258 166.27 temperature 30.0 720 < th dose independent rect. 17 16
264 166.30 atmosphere 1005.0 10 > th dose independent rect. 2 1
266 166.31 temperature 20.0 10 > th dose independent rect. 2 1
267 166.32 wind 1.0 10 > th dose independent no NA NA
276 166.37 wind 9.0 30 < th dose independent rect. 3 23
286 166.40 wind 1.0 10 > th dose independent rect. 21 12
292 166.42 wind 1.0 10 < th dose independent rect. 13 18
295 166.42 wind 1.0 30 < th dose dependent rect. 6 22
301 166.44 wind 1.0 10 > th dose independent rect. 17 23
302 166.44 humidity 50.0 10 > th dose dependent rect. 2 1
305 166.44 atmosphere 1015.0 30 < th dose dependent rect. 2 1
315 166.46 atmosphere 995.0 10 > th dose dependent rect. 2 1
318 166.47 temperature 10.0 10 > th dose independent rect. 2 1
320 166.47 temperature 30.0 10 < th dose independent rect. 2 1
321 166.47 humidity 50.0 10 > th dose independent rect. 2 1
324 166.47 atmosphere 995.0 10 > th dose independent rect. 2 1
325 166.47 atmosphere 1010.0 10 < th dose independent rect. 2 1
327 166.47 radiation 1.0 10 < th dose independent rect. 2 1
332 166.47 precipitation 0.1 10 < th dose independent rect. 2 1
333 166.47 wind 1.0 10 < th dose independent rect. 17 14
336 166.47 temperature 10.0 10 > th dose independent rect. 3 23
339 166.47 radiation 1.0 10 < th dose dependent rect. 2 1
344 166.47 precipitation 0.1 10 < th dose dependent rect. 2 1
381 166.49 wind 1.0 10 < th dose independent rect. 21 10
418 166.58 atmosphere 1000.0 10 > th dose independent rect. 3 23
422 166.59 temperature 30.0 30 < th dose dependent rect. 2 1
452 166.69 temperature 10.0 1440 > th dose independent rect. 3 1
455 166.69 temperature 30.0 1440 < th dose independent rect. 3 1
459 166.69 humidity 50.0 1440 > th dose independent rect. 3 1
468 166.69 atmosphere 995.0 1440 > th dose independent rect. 3 1
469 166.69 radiation 1.0 1440 < th dose independent rect. 3 1
491 166.69 temperature 10.0 1440 > th dose independent rect. 4 23
494 166.69 radiation 1.0 1440 < th dose dependent rect. 3 1
506 166.70 radiation 40.0 43200 < th dose dependent rect. 3 1
526 166.77 wind 1.0 10 < th dose independent rect. 24 22
535 166.82 wind 1.0 10 < th dose independent rect. 24 18
541 166.85 wind 1.0 10 < th dose independent rect. 24 16
545 166.86 temperature 30.0 90 > th dose independent rect. 10 1
546 166.86 wind 1.0 10 < th dose independent rect. 24 14
554 166.89 wind 1.0 30 < th dose dependent sin 16 NA
569 166.94 wind 1.0 30 > th dose independent rect. 2 1
601 167.01 atmosphere 1005.0 10 < th dose independent rect. 18 7
610 167.06 wind 1.0 720 < th dose independent rect. 14 7
615 167.08 wind 1.0 10 < th dose independent rect. 8 23
625 167.11 wind 1.0 10 < th dose independent no NA NA
626 167.11 wind 1.0 10 < th dose independent rect. 21 21
631 167.11 wind 1.0 10 < th dose independent rect. 15 23
632 167.11 wind 1.0 10 < th dose independent rect. 17 23
640 167.13 wind 1.0 10 < th dose independent rect. 21 19
643 167.13 wind 1.0 10 < th dose independent rect. 17 21
654 167.14 radiation 1.0 720 < th dose independent rect. 17 6
659 167.15 wind 1.0 10 < th dose independent rect. 21 17
679 167.18 precipitation 0.1 90 > th dose independent rect. 21 1
686 167.18 precipitation 0.1 90 > th dose dependent rect. 21 1
733 167.31 wind 1.0 10 < th dose dependent rect. 24 9
740 167.33 wind 1.0 14400 < th dose independent rect. 16 1
742 167.33 temperature 30.0 1440 < th dose independent rect. 17 9
744 167.33 wind 1.0 10 < th dose dependent rect. 24 7
781 167.43 temperature 30.0 1440 < th dose independent rect. 17 3
794 167.46 atmosphere 1005.0 90 > th dose independent rect. 19 8
802 167.49 temperature 30.0 720 > th dose independent rect. 17 1
803 167.49 wind 1.0 43200 < th dose independent rect. 16 6
808 167.50 wind 7.0 90 > th dose independent rect. 20 1
814 167.50 temperature 30.0 720 > th dose independent rect. 16 3
827 167.50 wind 1.0 10 > th dose independent rect. 24 10
835 167.50 wind 7.0 90 > th dose dependent rect. 20 1
889 167.56 wind 1.0 43200 < th dose independent rect. 18 2
891 167.56 temperature 30.0 1440 < th dose independent rect. 17 13
917 167.59 humidity 50.0 720 < th dose independent rect. 13 1
949 167.64 wind 1.0 43200 > th dose independent rect. 16 6
990 167.75 precipitation 0.1 10 > th dose independent rect. 21 1