FiT-DB / Search/ Help/ Sample detail

Os11g0272800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0164) R2 : 0.575
β1 : -1.39 (0.0602) R2dD : 0.512 R2D : 0.546
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.169 (0.0351) R2dN8 : 0.0291 R2N8 : 0.0634
σ : 0.308
deviance : 43.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.54 0.268 13 -1.43 0.411 -0.622 0.368 -0.667 0.105 1.65 23.1 179 -- --
32.96 0.267 13 -1.51 0.389 -0.479 0.239 -- 0.0819 1.8 24.1 239 -- --
32.99 0.268 13 -1.46 0.409 -0.586 -- -0.473 0.1 1.6 23.09 172 -- --
33.14 0.268 13 -1.52 0.393 -0.492 -- -- 0.0809 1.69 23.85 238 -- --
39.07 0.291 13 -1.5 -- -0.54 -- -0.255 0.0621 -- 26.79 965 -- --
36.14 0.282 13 -1.39 0.343 -- 0.228 -- 0.163 1.52 -- -- -- --
36.34 0.282 13 -1.4 0.343 -- -- -- 0.162 1.48 -- -- -- --
39.17 0.291 13 -1.54 -- -0.521 -- -- 0.0538 -- 27.19 959 -- --
86.47 0.433 12.9 -- 0.212 0.381 -- -- 0.359 1.3 37.24 20 -- --
43.57 0.308 13 -1.39 -- -- -- -- 0.169 -- -- -- -- --
87.95 0.439 12.9 -- 0.319 -- -- -- 0.318 1.33 -- -- -- --
88.64 0.438 12.9 -- -- 0.609 -- -- 0.393 -- 41.54 21 -- --
94.22 0.453 12.9 -- -- -- -- -- 0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.70 temperature 25 270 < th dose dependent rect. 8 22
2 32.73 temperature 25 270 < th dose dependent rect. 20 22
7 32.79 temperature 20 30 > th dose independent rect. 9 21
25 32.87 temperature 25 90 < th dose dependent rect. 23 20
30 32.89 temperature 25 270 < th dose dependent rect. 15 23
37 32.91 temperature 25 270 < th dose dependent no NA NA
52 32.94 temperature 25 10 < th dose dependent rect. 22 20
64 32.95 temperature 25 10 < th dose dependent rect. 20 22
83 32.98 temperature 20 90 > th dose independent rect. 7 23
113 33.02 temperature 25 270 < th dose dependent rect. 1 23
117 33.03 temperature 30 270 < th dose dependent sin 9 NA
123 33.03 temperature 25 10 < th dose dependent rect. 8 23
129 33.04 temperature 25 10 < th dose dependent rect. 1 23
133 33.05 temperature 25 10 < th dose dependent no NA NA
145 33.05 temperature 25 10 < th dose dependent rect. 11 23
148 33.06 temperature 15 270 > th dose dependent sin 10 NA
152 33.06 temperature 25 30 < th dose dependent rect. 3 23
155 33.06 temperature 25 10 < th dose dependent rect. 15 23
157 33.06 temperature 25 10 < th dose dependent rect. 17 23
228 33.11 temperature 25 10 < th dose dependent rect. 5 23
246 33.13 temperature 20 30 > th dose independent rect. 16 23
311 33.21 temperature 30 270 < th dose dependent rect. 20 11
332 33.24 temperature 20 30 < th dose independent rect. 17 19
346 33.27 temperature 25 10 < th dose dependent sin 6 NA
363 33.29 temperature 20 30 > th dose independent rect. 18 12
388 33.31 temperature 15 270 > th dose dependent rect. 23 12
403 33.33 temperature 20 30 > th dose independent rect. 16 14
417 33.34 temperature 20 10 < th dose independent rect. 22 14
433 33.35 temperature 15 270 > th dose dependent rect. 21 13
435 33.36 temperature 20 30 < th dose independent rect. 23 21
446 33.37 temperature 20 30 < th dose independent rect. 9 22
478 33.40 temperature 20 30 > th dose independent sin 8 NA
484 33.40 temperature 25 720 < th dose dependent rect. 8 16
487 33.40 temperature 25 720 < th dose dependent rect. 5 19
491 33.41 temperature 20 30 > th dose independent rect. 21 23
499 33.42 temperature 20 10 < th dose independent sin 8 NA
537 33.45 temperature 20 30 > th dose independent rect. 21 9
555 33.47 temperature 20 30 < th dose independent rect. 17 14
567 33.48 temperature 20 30 < th dose independent no NA NA
574 33.48 temperature 30 720 < th dose dependent rect. 19 4
582 33.49 temperature 20 30 < th dose independent rect. 11 20
588 33.49 temperature 20 30 < th dose independent rect. 1 23
589 33.49 temperature 20 30 < th dose independent rect. 3 23
590 33.49 temperature 20 30 < th dose independent rect. 5 23
591 33.49 temperature 20 30 < th dose independent rect. 11 23
593 33.49 temperature 20 30 < th dose independent rect. 19 23
595 33.49 temperature 10 720 > th dose dependent rect. 21 7
597 33.49 temperature 10 720 > th dose dependent rect. 16 12
601 33.49 temperature 25 270 < th dose dependent rect. 15 15
605 33.50 temperature 20 30 > th dose independent no NA NA
611 33.50 temperature 20 30 > th dose independent rect. 16 21
632 33.51 temperature 20 10 < th dose independent rect. 23 19
635 33.51 temperature 20 30 > th dose independent rect. 23 23
656 33.52 temperature 25 720 < th dose dependent rect. 18 7
657 33.52 temperature 20 30 > th dose dependent rect. 21 9
721 33.55 temperature 25 720 < th dose dependent sin 14 NA
756 33.56 temperature 25 720 < th dose dependent rect. 17 10
816 33.59 temperature 20 10 < th dose independent rect. 22 9
829 33.59 temperature 25 1440 < th dose dependent rect. 18 1
994 33.64 temperature 20 720 > th dose dependent rect. 21 5