Os11g0271100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0271100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.72 | 0.372 | 7.65 | -0.17 | 0.623 | -0.434 | 0.383 | -2.92 | 0.0386 | 16.9 | 9.987 | 4294 | -- | -- |
| 66.12 | 0.379 | 7.59 | -0.269 | 0.582 | -0.404 | 0.238 | -- | 0.0283 | 17.2 | 20.02 | 11864 | -- | -- |
| 62.94 | 0.369 | 7.63 | -0.16 | 0.616 | -0.424 | -- | -2.93 | 0.052 | 16.9 | 9.952 | 4730 | -- | -- |
| 66.28 | 0.379 | 7.6 | -0.284 | 0.594 | -0.432 | -- | -- | 0.014 | 17 | 20.02 | 11914 | -- | -- |
| 76.25 | 0.407 | 7.6 | -0.07 | -- | -0.494 | -- | -3.14 | 0.0768 | -- | 7.749 | 4964 | -- | -- |
| 72.28 | 0.399 | 7.57 | -0.259 | 0.607 | -- | 0.323 | -- | 0.129 | 17 | -- | -- | -- | -- |
| 72.55 | 0.399 | 7.56 | -0.258 | 0.609 | -- | -- | -- | 0.131 | 17 | -- | -- | -- | -- |
| 82.23 | 0.422 | 7.62 | -0.274 | -- | -0.457 | -- | -- | 0.0188 | -- | 10 | 5022 | -- | -- |
| 68.31 | 0.385 | 7.58 | -- | 0.61 | -0.432 | -- | -- | 0.0302 | 17 | 22.05 | 11957 | -- | -- |
| 92 | 0.448 | 7.56 | -0.28 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 74.3 | 0.403 | 7.56 | -- | 0.613 | -- | -- | -- | 0.16 | 17 | -- | -- | -- | -- |
| 85.26 | 0.43 | 7.61 | -- | -- | -0.436 | -- | -- | 0.0201 | -- | 10.01 | 4989 | -- | -- |
| 94.07 | 0.453 | 7.55 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.73 | radiation | 10 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 60.16 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 6 | 60.48 | radiation | 30 | 30 | > th | dose independent | rect. | 11 | 1 |
| 18 | 60.95 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 120 | 61.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 123 | 61.44 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 148 | 61.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 150 | 61.70 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 156 | 61.70 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 164 | 61.80 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 166 | 61.82 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 168 | 61.86 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 172 | 61.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 173 | 61.93 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 174 | 61.94 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 177 | 61.97 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 178 | 61.97 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 182 | 61.98 | radiation | 10 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 183 | 61.98 | radiation | 10 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 184 | 61.98 | radiation | 10 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 199 | 62.05 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 218 | 62.11 | radiation | 20 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 219 | 62.12 | radiation | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 223 | 62.14 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 224 | 62.14 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 227 | 62.17 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 230 | 62.20 | radiation | 20 | 4320 | < th | dose dependent | rect. | 15 | 6 |
| 234 | 62.20 | radiation | 20 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 235 | 62.20 | radiation | 40 | 4320 | < th | dose dependent | rect. | 14 | 18 |
| 247 | 62.22 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 251 | 62.22 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 252 | 62.22 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 331 | 62.29 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 340 | 62.33 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 343 | 62.33 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 353 | 62.33 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 15 |
| 356 | 62.34 | humidity | 60 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 357 | 62.34 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 389 | 62.37 | radiation | 20 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 398 | 62.39 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 7 |
| 426 | 62.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 454 | 62.47 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 461 | 62.49 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 484 | 62.49 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 497 | 62.51 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 498 | 62.51 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 506 | 62.53 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 536 | 62.56 | radiation | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 582 | 62.60 | radiation | 10 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 605 | 62.61 | radiation | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 618 | 62.62 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 621 | 62.63 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 625 | 62.63 | radiation | 20 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 715 | 62.67 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 729 | 62.67 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 748 | 62.68 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 751 | 62.68 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 11 |
| 772 | 62.70 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 803 | 62.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 806 | 62.71 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 839 | 62.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 859 | 62.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 905 | 62.77 | humidity | 80 | 14400 | > th | dose independent | sin | 14 | NA |
| 975 | 62.80 | radiation | 10 | 4320 | < th | dose independent | no | NA | NA |
| 979 | 62.80 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 16 |