Os11g0271000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0271000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.45	(0.0457)	R²	:	0.0804
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.71	(0.428)	R²_dE	:	0.0808	R²_E	:	0.0804
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.014	(0.0965)	R²_dN8	:	5.72e-05	R²_N8	:	-0.000315
σ	:	0.857
deviance	:	338.76
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	3.931
memory length	:	45
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	15.4
open length of G	:	2.33

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
315.66	0.835	3.48	0.442	0.177	10.9	0.946	-34.4	0.0605	14	2.878	10	16	1.93
348.03	0.876	3.45	0.455	0.187	2.34	0.609	--	0.0232	13.2	2.983	11	16	1.95
319	0.832	3.48	0.438	0.185	10.9	--	-33.8	0.056	14.5	2.858	9	16	1.93
337.85	0.856	3.48	0.46	0.239	2.71	--	--	-0.0243	14.1	4.402	45	15.4	2.12
320.89	0.834	3.48	0.447	--	11	--	-34.3	0.0662	--	2.854	9	16	1.92
355.96	0.884	3.45	0.506	0.248	--	0.658	--	0.0148	14.2	--	--	--	--
357.14	0.885	3.45	0.525	0.271	--	--	--	0.0198	15.5	--	--	--	--
333.07	0.85	3.44	0.463	--	2.62	--	--	0.0669	--	3.947	45	15.4	2.35
337.89	0.856	3.45	--	0.117	2.69	--	--	0.0141	12.7	3.902	45	15.4	2.34
361.26	0.888	3.45	0.514	--	--	--	--	0.0126	--	--	--	--	--
364.42	0.893	3.47	--	0.261	--	--	--	-0.0387	15.5	--	--	--	--
338.76	0.857	3.45	--	--	2.71	--	--	0.014	--	3.931	45	15.4	2.33
368.23	0.896	3.47	--	--	--	--	--	-0.0444	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	320.39	wind	3.0	30	< th	dose independent	rect.	14	4
7	322.51	wind	3.0	10	< th	dose dependent	rect.	16	2
9	323.65	wind	5.0	90	< th	dose dependent	rect.	13	5
11	324.30	wind	3.0	90	< th	dose dependent	rect.	15	3
29	327.26	radiation	40.0	90	> th	dose independent	rect.	15	1
46	327.26	radiation	40.0	90	> th	dose dependent	rect.	15	1
64	327.40	radiation	20.0	10	> th	dose dependent	rect.	15	1
82	327.64	radiation	20.0	10	> th	dose independent	rect.	15	1
330	331.25	humidity	60.0	10	< th	dose independent	rect.	14	3
354	331.64	humidity	60.0	30	< th	dose dependent	rect.	14	2
439	334.02	wind	3.0	10	< th	dose independent	rect.	16	1
525	335.48	atmosphere	1005.0	10	< th	dose dependent	rect.	14	4
566	335.87	atmosphere	1005.0	270	< th	dose dependent	rect.	15	1
590	336.11	atmosphere	1005.0	270	< th	dose dependent	rect.	12	5
615	336.27	radiation	40.0	10	< th	dose independent	rect.	17	20
653	336.68	radiation	30.0	30	< th	dose independent	sin	14	NA
696	337.25	radiation	40.0	10	< th	dose independent	rect.	4	9
721	337.58	wind	7.0	90	< th	dose independent	rect.	13	14
729	337.69	radiation	20.0	10	> th	dose independent	sin	14	NA
846	338.44	radiation	40.0	270	< th	dose independent	rect.	1	11
850	338.45	humidity	90.0	90	< th	dose independent	rect.	2	2
877	338.73	temperature	10.0	90	> th	dose independent	rect.	3	10
878	338.73	atmosphere	995.0	90	> th	dose independent	rect.	3	10
879	338.73	atmosphere	1015.0	90	< th	dose independent	rect.	3	10
880	338.73	temperature	10.0	90	> th	dose independent	rect.	13	14
898	338.83	temperature	30.0	270	< th	dose independent	rect.	12	3
908	338.95	humidity	90.0	10	< th	dose independent	rect.	3	1
912	338.97	wind	9.0	30	< th	dose dependent	rect.	13	15
920	339.01	radiation	10.0	30	> th	dose dependent	sin	13	NA
921	339.03	radiation	1.0	43200	< th	dose dependent	rect.	3	1
951	339.27	precipitation	0.1	90	< th	dose independent	rect.	3	10
954	339.27	precipitation	0.1	90	< th	dose dependent	rect.	3	10