Os11g0269400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0269400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.06 | 0.605 | 2.99 | 0.517 | 0.235 | 10.2 | 0.146 | 30.6 | -0.00885 | 9.64 | 10.4 | 258 | -- | -- |
| 181.22 | 0.627 | 2.82 | 0.644 | 0.29 | 5.11 | 0.531 | -- | 0.185 | 8.75 | 10.59 | 226 | -- | -- |
| 165.95 | 0.6 | 2.99 | 0.514 | 0.232 | 10.4 | -- | 31 | -0.00962 | 9.55 | 10.48 | 260 | -- | -- |
| 168.94 | 0.605 | 2.93 | 0.265 | 0.211 | 3.01 | -- | -- | -0.0233 | 11.1 | 10.4 | 229 | -- | -- |
| 169.1 | 0.606 | 3 | 0.525 | -- | 10.9 | -- | 33.5 | -0.011 | -- | 10.49 | 264 | -- | -- |
| 192.89 | 0.651 | 2.94 | 0.155 | 0.217 | -- | 0.177 | -- | -0.0508 | 10.8 | -- | -- | -- | -- |
| 193.02 | 0.651 | 2.94 | 0.163 | 0.216 | -- | -- | -- | -0.0499 | 11 | -- | -- | -- | -- |
| 171.63 | 0.61 | 2.94 | 0.277 | -- | 3.21 | -- | -- | -0.00435 | -- | 10.45 | 232 | -- | -- |
| 170.48 | 0.608 | 2.95 | -- | 0.224 | 3.05 | -- | -- | -0.0513 | 10.1 | 10.43 | 245 | -- | -- |
| 195.92 | 0.654 | 2.95 | 0.158 | -- | -- | -- | -- | -0.0515 | -- | -- | -- | -- | -- |
| 193.72 | 0.651 | 2.95 | -- | 0.215 | -- | -- | -- | -0.0681 | 10.9 | -- | -- | -- | -- |
| 173.61 | 0.614 | 2.94 | -- | -- | 3.16 | -- | -- | -0.0347 | -- | 10.42 | 260 | -- | -- |
| 196.58 | 0.654 | 2.95 | -- | -- | -- | -- | -- | -0.069 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.01 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 3 |
| 3 | 158.18 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 3 |
| 33 | 163.71 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 43 | 163.71 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 234 | 168.31 | wind | 9 | 90 | > th | dose dependent | sin | 17 | NA |
| 253 | 169.10 | wind | 9 | 90 | < th | dose independent | sin | 16 | NA |
| 412 | 170.83 | wind | 9 | 90 | > th | dose independent | sin | 16 | NA |
| 494 | 172.09 | wind | 9 | 270 | > th | dose dependent | sin | 23 | NA |
| 613 | 173.01 | wind | 9 | 270 | > th | dose independent | sin | 22 | NA |
| 624 | 173.04 | wind | 9 | 270 | < th | dose independent | sin | 23 | NA |
| 805 | 174.01 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 928 | 174.61 | wind | 9 | 270 | < th | dose independent | no | NA | NA |