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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0267400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ClpC.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.57 (0.041) R2 : 0.371
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.599 (0.103) R2dC : 0.049 R2C : 0.0249
β3 : -1.26 (0.123) R2dE : 0.186 R2E : 0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.503 (0.0954) R2dN8 : 0.0644 R2N8 : 0.144
σ : 0.742
deviance : 253.88
__
_____
C
peak time of C : 6.72
E
wheather : temperature
threshold : 22.72
memory length : 11282
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.6 0.747 4.52 0.813 0.55 -1.24 -0.742 3.92 -0.583 5.18 27 2926 -- --
252.09 0.739 4.55 0.788 0.545 -1.56 -1.02 -- -0.405 5.42 21.39 22289 -- --
252.7 0.74 4.51 0.783 0.586 -1.24 -- 3.8 -0.593 6.09 26.9 2952 -- --
248.9 0.735 4.54 1.01 0.583 -1.77 -- -- -0.371 6.72 20.4 23294 -- --
269.2 0.764 4.52 0.803 -- -1.25 -- 4.1 -0.592 -- 26.8 3060 -- --
293.26 0.803 4.7 -0.795 0.541 -- 1.07 -- -1.06 8.18 -- -- -- --
294.73 0.804 4.7 -0.771 0.586 -- -- -- -1.06 6.96 -- -- -- --
266.37 0.76 4.56 0.985 -- -1.78 -- -- -0.373 -- 20.4 22015 -- --
253.88 0.742 4.57 -- 0.599 -1.26 -- -- -0.503 6.72 22.72 11282 -- --
312.78 0.826 4.71 -0.759 -- -- -- -- -1.05 -- -- -- -- --
310.41 0.824 4.68 -- 0.578 -- -- -- -0.979 7.04 -- -- -- --
273.13 0.77 4.58 -- -- -1.22 -- -- -0.505 -- 22.8 10970 -- --
327.98 0.845 4.69 -- -- -- -- -- -0.97 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.88 temperature 25.0 90 < th dose dependent rect. 23 12
2 239.98 temperature 25.0 90 < th dose dependent sin 8 NA
3 240.66 temperature 25.0 10 < th dose dependent sin 7 NA
7 242.00 temperature 25.0 270 < th dose dependent rect. 22 10
9 242.19 radiation 1.0 720 > th dose dependent rect. 18 11
22 243.39 temperature 20.0 90 > th dose dependent sin 9 NA
24 243.57 humidity 50.0 43200 < th dose dependent rect. 9 1
31 244.45 humidity 50.0 43200 < th dose dependent rect. 6 5
32 244.46 humidity 50.0 43200 < th dose dependent rect. 4 7
34 244.51 radiation 1.0 720 > th dose dependent rect. 18 1
65 245.51 temperature 20.0 90 < th dose independent rect. 23 12
77 246.04 temperature 20.0 270 < th dose independent rect. 22 8
90 246.43 temperature 25.0 720 < th dose independent rect. 17 6
94 246.73 radiation 10.0 4320 < th dose dependent rect. 18 2
106 247.07 temperature 20.0 90 < th dose independent sin 8 NA
117 247.43 radiation 10.0 4320 < th dose dependent rect. 18 5
132 247.90 temperature 20.0 720 > th dose dependent rect. 17 10
133 247.91 temperature 30.0 720 < th dose dependent rect. 18 7
137 248.09 temperature 25.0 10 < th dose dependent rect. 22 12
141 248.12 radiation 10.0 4320 < th dose dependent rect. 18 8
154 248.27 radiation 20.0 4320 < th dose independent rect. 17 13
160 248.42 atmosphere 1005.0 43200 > th dose independent rect. 18 2
165 248.51 radiation 1.0 14400 < th dose dependent rect. 24 5
174 248.70 temperature 20.0 10 < th dose independent sin 7 NA
175 248.70 atmosphere 1005.0 43200 < th dose independent rect. 18 2
177 248.71 precipitation 0.1 14400 > th dose dependent rect. 1 8
191 248.85 atmosphere 1005.0 43200 < th dose independent rect. 16 8
192 248.87 humidity 90.0 14400 > th dose dependent rect. 2 17
194 248.88 humidity 90.0 14400 > th dose dependent rect. 1 19
210 249.02 precipitation 0.1 14400 > th dose independent rect. 1 8
221 249.09 humidity 90.0 14400 > th dose dependent rect. 10 20
231 249.14 radiation 1.0 14400 < th dose dependent rect. 6 4
244 249.23 humidity 50.0 43200 < th dose independent rect. 4 6
276 249.40 atmosphere 1005.0 43200 < th dose independent rect. 15 12
286 249.46 atmosphere 1005.0 43200 < th dose independent rect. 11 13
289 249.47 precipitation 0.1 14400 < th dose independent rect. 1 8
291 249.47 precipitation 0.1 14400 < th dose dependent rect. 1 8
299 249.50 temperature 25.0 14400 > th dose independent rect. 11 1
304 249.52 temperature 25.0 720 < th dose independent rect. 19 2
305 249.52 temperature 25.0 90 < th dose dependent rect. 17 18
324 249.58 temperature 25.0 720 < th dose dependent rect. 21 4
330 249.60 atmosphere 1005.0 43200 < th dose independent sin 17 NA
332 249.60 radiation 1.0 14400 < th dose dependent rect. 6 6
353 249.69 atmosphere 1005.0 43200 < th dose independent rect. 11 17
354 249.70 temperature 25.0 14400 < th dose independent rect. 11 1
356 249.70 radiation 1.0 43200 < th dose dependent rect. 19 10
364 249.73 radiation 1.0 4320 > th dose independent rect. 18 11
370 249.74 humidity 90.0 14400 > th dose dependent sin 3 NA
371 249.74 radiation 1.0 14400 < th dose dependent rect. 4 1
377 249.76 atmosphere 1005.0 43200 > th dose independent rect. 16 7
400 249.81 precipitation 0.1 14400 > th dose independent rect. 5 3
413 249.85 precipitation 0.1 14400 > th dose dependent rect. 5 3
442 249.93 temperature 20.0 14400 < th dose independent rect. 17 9
446 249.94 wind 1.0 43200 < th dose dependent rect. 12 17
448 249.95 radiation 1.0 14400 < th dose independent rect. 7 5
477 250.00 humidity 50.0 43200 < th dose independent rect. 9 1
478 250.00 radiation 1.0 14400 > th dose independent rect. 7 5
488 250.02 radiation 1.0 4320 > th dose independent rect. 18 1
500 250.02 humidity 90.0 14400 > th dose dependent no NA NA
517 250.07 humidity 90.0 14400 > th dose dependent rect. 14 23
542 250.13 radiation 40.0 43200 < th dose independent rect. 10 1
545 250.13 humidity 90.0 14400 > th dose dependent sin 10 NA
553 250.15 atmosphere 1005.0 43200 > th dose independent rect. 15 12
591 250.23 wind 1.0 43200 < th dose dependent rect. 10 20
620 250.30 atmosphere 1005.0 43200 > th dose independent rect. 10 12
635 250.33 atmosphere 1005.0 43200 > th dose independent rect. 10 10
658 250.37 wind 1.0 43200 < th dose dependent rect. 23 3
660 250.38 humidity 80.0 43200 > th dose independent rect. 2 1
679 250.41 atmosphere 1005.0 43200 > th dose independent sin 17 NA
680 250.41 atmosphere 1005.0 43200 < th dose independent rect. 10 7
715 250.48 precipitation 0.1 14400 < th dose independent rect. 5 3
718 250.48 precipitation 0.1 14400 < th dose dependent rect. 5 3
725 250.51 temperature 20.0 14400 < th dose independent sin 15 NA
735 250.53 temperature 20.0 14400 > th dose independent rect. 18 8
741 250.54 atmosphere 1005.0 43200 > th dose independent rect. 11 17
773 250.60 radiation 1.0 4320 < th dose independent rect. 18 2
780 250.60 humidity 90.0 14400 > th dose dependent rect. 4 23
810 250.67 temperature 20.0 14400 < th dose independent rect. 14 16
817 250.68 radiation 1.0 14400 < th dose independent rect. 7 3
831 250.69 wind 3.0 14400 > th dose dependent rect. 10 2
869 250.78 radiation 10.0 43200 < th dose independent rect. 6 1
892 250.83 radiation 1.0 14400 > th dose independent rect. 7 3
903 250.85 radiation 1.0 4320 < th dose independent rect. 18 5
918 250.86 temperature 30.0 720 < th dose dependent rect. 16 14
929 250.89 atmosphere 1005.0 43200 > th dose independent rect. 10 7
933 250.90 temperature 20.0 14400 > th dose independent rect. 14 16
941 250.93 temperature 20.0 14400 > th dose independent sin 15 NA
956 250.94 temperature 25.0 10 < th dose dependent rect. 20 14
966 250.96 temperature 25.0 4320 > th dose independent rect. 17 1