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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0264900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0167) R2 : 0.012
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0828 (0.0352) R2dN8 : 0.0155 R2N8 : 0.012
σ : 0.315
deviance : 45.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.41 0.284 2.85 0.0463 0.106 0.283 -0.133 -1.58 0.189 8.72 24.99 4301 -- --
37.03 0.283 2.89 -0.115 0.118 0.446 -0.147 -- 0.154 8.71 19 11150 -- --
36.43 0.281 2.85 0.0201 0.102 0.261 -- -1.5 0.192 9.17 24.8 4242 -- --
36.09 0.28 2.88 0.00376 0.11 0.516 -- -- 0.183 8.84 18.5 20683 -- --
37.03 0.283 2.86 0.0143 -- 0.282 -- -1.41 0.198 -- 24.8 3920 -- --
39.09 0.293 2.92 -0.456 0.117 -- -0.0787 -- 0.0317 9.67 -- -- -- --
39.11 0.293 2.92 -0.458 0.116 -- -- -- 0.0318 9.96 -- -- -- --
36.76 0.282 2.89 0.00467 -- 0.519 -- -- 0.182 -- 18.4 20760 -- --
36.04 0.28 2.88 -- 0.113 0.51 -- -- 0.181 9.8 18.4 20664 -- --
39.92 0.295 2.92 -0.46 -- -- -- -- 0.0317 -- -- -- -- --
44.64 0.313 2.91 -- 0.118 -- -- -- 0.0828 10.2 -- -- -- --
36.76 0.282 2.89 -- -- 0.513 -- -- 0.183 -- 18.46 20770 -- --
45.5 0.315 2.91 -- -- -- -- -- 0.0828 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.39 wind 7.0 43200 > th dose dependent rect. 7 1
2 34.41 wind 9.0 43200 < th dose independent rect. 5 4
3 34.48 wind 9.0 43200 < th dose independent rect. 8 1
4 34.48 atmosphere 995.0 43200 > th dose independent rect. 8 1
6 34.48 wind 7.0 43200 > th dose dependent rect. 5 4
7 34.49 wind 9.0 43200 > th dose independent rect. 8 1
8 34.49 atmosphere 995.0 43200 < th dose independent rect. 7 1
20 34.49 atmosphere 995.0 43200 < th dose dependent rect. 7 1
34 34.49 wind 9.0 43200 > th dose dependent rect. 22 11
41 34.50 wind 9.0 43200 > th dose dependent rect. 2 7
42 34.50 wind 9.0 43200 > th dose dependent rect. 24 9
92 34.61 wind 9.0 43200 > th dose dependent rect. 23 2
112 34.67 wind 9.0 43200 > th dose independent rect. 23 2
118 34.68 wind 9.0 43200 > th dose independent rect. 2 8
119 34.68 wind 9.0 43200 > th dose independent rect. 24 10
126 34.70 wind 9.0 43200 < th dose independent rect. 24 10
127 34.71 temperature 20.0 720 < th dose independent rect. 23 3
140 34.73 wind 9.0 43200 > th dose dependent sin 8 NA
142 34.73 wind 9.0 43200 > th dose dependent rect. 18 17
149 34.75 wind 9.0 43200 > th dose dependent rect. 19 15
196 34.84 wind 9.0 43200 > th dose dependent rect. 23 4
216 34.87 radiation 40.0 4320 < th dose independent rect. 6 3
228 34.89 radiation 40.0 4320 < th dose independent rect. 1 8
232 34.89 radiation 40.0 4320 < th dose independent rect. 18 15
235 34.90 radiation 40.0 4320 < th dose independent rect. 20 13
273 34.99 radiation 30.0 4320 > th dose dependent rect. 7 2
293 35.01 wind 9.0 43200 < th dose independent rect. 23 2
299 35.02 temperature 10.0 43200 < th dose dependent rect. 22 6
301 35.03 wind 9.0 43200 > th dose independent rect. 23 4
328 35.07 temperature 10.0 43200 < th dose dependent sin 14 NA
330 35.07 temperature 20.0 720 > th dose dependent rect. 18 8
366 35.12 temperature 10.0 43200 < th dose dependent rect. 3 22
368 35.13 temperature 10.0 43200 < th dose dependent no NA NA
369 35.13 temperature 10.0 43200 < th dose dependent rect. 22 9
543 35.16 temperature 10.0 43200 > th dose independent rect. 5 1
544 35.16 precipitation 0.1 43200 < th dose independent rect. 6 1
548 35.16 precipitation 0.1 43200 < th dose dependent rect. 6 1
572 35.20 precipitation 0.1 43200 > th dose independent rect. 6 1
573 35.20 temperature 10.0 43200 > th dose independent rect. 1 2
574 35.20 temperature 10.0 43200 < th dose independent rect. 1 2
576 35.20 temperature 10.0 43200 > th dose independent rect. 23 5
577 35.20 temperature 10.0 43200 < th dose independent rect. 23 5
580 35.20 temperature 10.0 43200 > th dose independent rect. 23 8
583 35.20 precipitation 0.1 43200 > th dose dependent rect. 6 1
608 35.21 temperature 10.0 43200 > th dose independent rect. 1 7
613 35.21 temperature 10.0 43200 > th dose independent rect. 16 15
628 35.22 temperature 10.0 43200 < th dose independent rect. 22 9
632 35.22 temperature 10.0 43200 > th dose independent rect. 19 12
636 35.22 temperature 10.0 43200 > th dose independent rect. 14 17
640 35.23 temperature 10.0 43200 > th dose independent sin 8 NA
643 35.23 temperature 10.0 43200 > th dose independent rect. 3 5
681 35.24 precipitation 0.1 43200 < th dose independent rect. 5 4
700 35.24 temperature 10.0 43200 > th dose independent rect. 1 14
708 35.24 temperature 10.0 43200 > th dose independent rect. 23 16
712 35.24 temperature 10.0 43200 > th dose independent rect. 1 19
716 35.24 temperature 10.0 43200 < th dose dependent sin 22 NA
719 35.24 temperature 10.0 43200 < th dose dependent rect. 1 2
721 35.24 precipitation 0.1 43200 < th dose dependent rect. 5 4
727 35.25 wind 9.0 43200 > th dose independent rect. 7 8
757 35.25 temperature 10.0 43200 > th dose independent rect. 1 16
776 35.25 temperature 10.0 43200 > th dose independent rect. 23 20
783 35.25 radiation 40.0 270 < th dose independent rect. 9 21
787 35.25 temperature 10.0 43200 > th dose independent rect. 1 23
790 35.25 precipitation 0.1 43200 > th dose dependent rect. 5 4
797 35.26 temperature 10.0 43200 < th dose independent sin 7 NA
804 35.26 precipitation 0.1 43200 > th dose independent rect. 5 4
818 35.26 wind 9.0 43200 < th dose independent rect. 6 9
885 35.27 temperature 10.0 43200 < th dose independent sin 4 NA
907 35.27 temperature 10.0 43200 > th dose independent rect. 3 12
933 35.27 temperature 10.0 43200 > th dose independent rect. 3 17
956 35.27 temperature 10.0 43200 > th dose independent rect. 19 20
981 35.28 temperature 10.0 43200 > th dose independent no NA NA
983 35.28 temperature 10.0 43200 < th dose independent rect. 5 1
990 35.28 temperature 10.0 43200 < th dose independent rect. 3 5