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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0264000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0167) R2 : 0.00244
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0371 (0.0351) R2dN8 : 0.00315 R2N8 : 0.00244
σ : 0.314
deviance : 45.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.09 0.308 3.04 0.174 0.3 0.209 -0.618 -0.813 0.0691 12.1 0.6122 228 -- --
43.43 0.307 3.05 0.129 0.334 0.226 0.23 -- 0.0571 12.3 0.78 180 -- --
43.3 0.306 3.05 0.139 0.297 0.204 -- -0.284 0.0599 12.2 0.7199 212 -- --
43.65 0.308 3.05 0.135 0.347 0.242 -- -- 0.0596 12.2 0.7855 180 -- --
43.93 0.31 3.05 0.106 -- -0.128 -- -0.235 0.0504 -- 45.96 640 -- --
44.18 0.312 3.05 0.115 0.112 -- 0.0657 -- 0.0497 9.59 -- -- -- --
44.19 0.311 3.05 0.117 0.113 -- -- -- 0.0495 9.2 -- -- -- --
44.11 0.311 3.05 0.114 -- -0.131 -- -- 0.0511 -- 45.96 640 -- --
44.14 0.309 3.05 -- 0.343 0.243 -- -- 0.0525 12.2 0.8602 180 -- --
44.93 0.313 3.05 0.116 -- -- -- -- 0.05 -- -- -- -- --
44.55 0.312 3.05 -- 0.113 -- -- -- 0.0365 9.12 -- -- -- --
44.46 0.312 3.06 -- -- -0.133 -- -- 0.0384 -- 46.7 796 -- --
45.29 0.314 3.06 -- -- -- -- -- 0.0371 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.92 wind 7.0 30 < th dose independent rect. 12 1
2 38.95 temperature 25.0 30 > th dose independent rect. 12 1
3 38.95 humidity 90.0 30 < th dose independent rect. 12 1
5 38.96 temperature 15.0 30 > th dose dependent rect. 12 1
9 39.03 wind 1.0 30 > th dose independent rect. 12 1
10 39.03 atmosphere 995.0 30 > th dose dependent rect. 12 1
11 39.04 atmosphere 1000.0 30 > th dose independent rect. 12 1
13 39.05 temperature 10.0 30 > th dose independent rect. 12 1
16 39.05 atmosphere 1015.0 30 < th dose independent rect. 12 1
17 39.05 radiation 1.0 30 > th dose independent rect. 12 1
18 39.05 precipitation 0.1 30 < th dose independent rect. 12 1
19 39.05 temperature 10.0 30 > th dose independent rect. 13 23
20 39.05 precipitation 0.1 30 < th dose dependent rect. 12 1
24 39.11 humidity 50.0 30 > th dose independent rect. 12 1
25 39.13 temperature 30.0 30 < th dose independent rect. 12 1
27 39.19 wind 1.0 30 > th dose dependent rect. 12 1
28 39.21 wind 9.0 30 < th dose dependent rect. 12 1
32 39.25 radiation 1.0 30 > th dose dependent rect. 12 1
33 39.26 humidity 90.0 30 < th dose dependent rect. 12 1
35 39.29 temperature 10.0 1440 > th dose independent rect. 13 1
39 39.29 atmosphere 995.0 1440 > th dose independent rect. 13 1
42 39.29 temperature 10.0 1440 > th dose independent rect. 14 23
45 39.29 humidity 50.0 30 > th dose dependent rect. 12 1
48 39.42 atmosphere 1015.0 30 < th dose dependent rect. 12 1
49 39.46 radiation 40.0 30 > th dose independent rect. 12 1
61 39.73 wind 9.0 30 < th dose independent rect. 13 23
112 41.17 atmosphere 1000.0 270 < th dose independent rect. 16 2
116 41.19 atmosphere 1000.0 270 < th dose dependent rect. 16 1
117 41.25 temperature 20.0 10 < th dose independent rect. 19 1
123 41.25 temperature 20.0 10 < th dose independent rect. 15 5
137 41.27 precipitation 0.1 270 > th dose independent rect. 16 1
138 41.27 precipitation 0.1 270 > th dose dependent rect. 16 1
148 41.29 precipitation 0.1 270 > th dose dependent rect. 16 3
149 41.30 precipitation 0.1 270 > th dose independent rect. 18 1
151 41.30 precipitation 0.1 270 > th dose dependent rect. 18 1
153 41.31 atmosphere 995.0 10 > th dose independent rect. 13 23
161 41.38 precipitation 0.1 270 > th dose independent rect. 16 3
190 41.85 precipitation 0.1 270 > th dose dependent rect. 8 10
197 41.96 atmosphere 1005.0 10 < th dose independent rect. 20 1
204 42.01 atmosphere 1005.0 10 > th dose dependent rect. 2 3
217 42.14 temperature 30.0 30 < th dose dependent rect. 12 1
221 42.19 temperature 25.0 90 > th dose dependent rect. 1 4
228 42.24 atmosphere 1005.0 10 < th dose independent rect. 18 3
231 42.24 atmosphere 995.0 90 > th dose dependent rect. 13 22
234 42.27 temperature 25.0 270 > th dose dependent rect. 1 1
235 42.28 temperature 25.0 270 > th dose independent rect. 2 1
255 42.34 precipitation 0.1 270 > th dose dependent sin 21 NA
256 42.34 temperature 25.0 90 < th dose dependent rect. 18 1
257 42.34 temperature 25.0 30 > th dose dependent rect. 14 21
263 42.36 atmosphere 995.0 720 > th dose dependent rect. 13 2
271 42.39 temperature 25.0 30 > th dose dependent rect. 16 19
292 42.45 atmosphere 1000.0 270 > th dose independent rect. 13 20
293 42.45 temperature 25.0 10 < th dose dependent rect. 20 1
340 42.50 radiation 40.0 10 > th dose independent rect. 12 22
346 42.51 atmosphere 1000.0 720 > th dose independent rect. 11 6
347 42.52 temperature 20.0 10 > th dose independent sin 21 NA
353 42.52 atmosphere 1000.0 270 > th dose dependent rect. 13 8
357 42.53 precipitation 0.1 10 < th dose independent rect. 13 23
362 42.53 precipitation 0.1 10 < th dose dependent rect. 13 23
408 42.61 radiation 30.0 30 < th dose independent rect. 12 1
415 42.61 temperature 25.0 720 > th dose dependent rect. 6 2
431 42.63 temperature 30.0 10 < th dose independent rect. 5 14
442 42.64 atmosphere 1000.0 30 > th dose independent rect. 3 23
447 42.64 precipitation 0.1 270 > th dose dependent rect. 1 17
449 42.64 atmosphere 995.0 270 > th dose dependent rect. 13 19
460 42.65 wind 3.0 30 > th dose independent rect. 9 5
514 42.68 atmosphere 1000.0 720 > th dose independent rect. 5 12
515 42.68 atmosphere 1000.0 720 > th dose independent rect. 9 14
525 42.69 wind 3.0 30 > th dose independent rect. 7 7
538 42.70 atmosphere 1000.0 720 > th dose independent sin 21 NA
550 42.70 atmosphere 995.0 720 > th dose independent rect. 23 16
553 42.70 wind 1.0 90 > th dose dependent rect. 9 4
580 42.72 temperature 20.0 10 < th dose independent sin 21 NA
584 42.72 radiation 40.0 10 < th dose independent rect. 14 21
599 42.73 atmosphere 1000.0 720 > th dose independent rect. 5 20
630 42.74 atmosphere 1000.0 30 > th dose independent rect. 16 19
650 42.75 temperature 20.0 10 > th dose independent rect. 14 10
664 42.75 radiation 30.0 10 < th dose independent rect. 16 19
685 42.76 temperature 30.0 10 < th dose independent rect. 5 21
686 42.76 radiation 1.0 90 > th dose independent rect. 13 23
688 42.76 wind 1.0 90 > th dose dependent rect. 7 6
718 42.78 atmosphere 1000.0 720 < th dose independent rect. 8 9
743 42.78 precipitation 0.1 270 > th dose dependent rect. 10 17
744 42.78 atmosphere 995.0 30 > th dose dependent rect. 16 19
760 42.79 wind 1.0 30 > th dose dependent rect. 4 10
771 42.80 atmosphere 1005.0 30 > th dose independent rect. 2 3
774 42.80 atmosphere 1000.0 270 > th dose independent rect. 13 9
779 42.80 radiation 40.0 10 < th dose independent rect. 12 23
790 42.81 humidity 90.0 10 < th dose independent rect. 3 2
793 42.81 humidity 90.0 90 < th dose independent rect. 2 3
799 42.81 wind 1.0 90 > th dose dependent rect. 1 12
836 42.82 precipitation 0.1 270 > th dose dependent rect. 8 19
850 42.83 atmosphere 1000.0 720 > th dose independent rect. 13 12
901 42.85 radiation 10.0 10 < th dose independent rect. 5 21
903 42.85 temperature 30.0 10 < th dose independent rect. 3 23
914 42.85 radiation 40.0 10 < th dose dependent rect. 3 23
916 42.86 atmosphere 1000.0 720 > th dose independent rect. 3 8
930 42.86 atmosphere 995.0 30 > th dose dependent rect. 14 12
941 42.87 wind 9.0 720 < th dose independent rect. 3 8
959 42.88 temperature 25.0 720 > th dose independent rect. 5 4
964 42.88 atmosphere 1000.0 30 > th dose independent rect. 5 14
970 42.88 atmosphere 1000.0 10 > th dose independent rect. 5 21
977 42.88 radiation 1.0 14400 < th dose dependent rect. 3 1
991 42.89 atmosphere 1000.0 720 < th dose independent rect. 11 6
996 42.89 atmosphere 1000.0 10 > th dose independent rect. 14 12