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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0262600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.9 (0.185) R2 : 0.336
β1 : 7.9 (1.4) R2dD : 0.777 R2D : -1.81
β2 : 1.11 (0.235) R2dC : 0.033 R2C : -0.316
β3 : 5.5 (0.733) R2dE : 0.986 R2E : -1.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -52.5 (5.92) R2dD*E : 2.76 R2D*E : -1.01
γ1 : 0.137 (0.224) R2dN8 : 0.000901 R2N8 : -0.309
σ : 1.78
deviance : 1462.07
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_____
C
peak time of C : 21.5
E
wheather : temperature
threshold : 29.97
memory length : 1438
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.83
open length of G : 1.83

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1460.97 1.8 3.9 7.93 1.09 5.5 0.64 -52.5 0.12 21.5 29.96 1438 9.84 1.87
1747.98 1.96 5.33 -3.85 0.936 0.0235 0.533 -- -0.759 22.4 29.96 1438 9.84 1.87
1462.07 1.78 3.9 7.9 1.11 5.5 -- -52.5 0.137 21.5 29.97 1438 9.83 1.83
1733.24 1.95 5.35 -3.88 0.622 -0.623 -- -- -0.859 20.7 99.25 10 11.8 3.05
1530.7 1.82 3.88 7.81 -- 5.41 -- -52.2 0.111 -- 29.94 1436 9.82 1.87
1748 1.96 5.33 -3.85 0.93 -- 0.535 -- -0.759 22.4 -- -- -- --
1749.16 1.96 5.33 -3.87 0.928 -- -- -- -0.76 22.4 -- -- -- --
1751.68 1.95 5.32 -3.9 -- -0.823 -- -- -0.88 -- 145.3 13 11.7 3.12
2108.37 2.15 5.24 -- 0.895 -0.954 -- -- -0.383 18 82.39 6 11.3 6.22
1801.76 1.98 5.31 -3.85 -- -- -- -- -0.757 -- -- -- -- --
2143.53 2.17 5.24 -- 0.908 -- -- -- -0.329 22.1 -- -- -- --
2144.68 2.16 5.22 -- -- -0.719 -- -- -0.383 -- 82.39 6 11.3 6.22
2193.35 2.19 5.21 -- -- -- -- -- -0.329 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1458.79 humidity 80 14400 > th dose independent rect. 19 14
2 1458.91 wind 9 14400 > th dose dependent rect. 13 2
8 1466.25 humidity 80 14400 < th dose independent rect. 19 14
10 1469.38 humidity 80 14400 > th dose independent rect. 22 11
17 1473.04 humidity 80 14400 < th dose dependent rect. 19 12
18 1473.22 humidity 80 14400 > th dose independent sin 10 NA
23 1474.99 humidity 80 14400 < th dose independent sin 10 NA
28 1477.42 temperature 30 1440 < th dose independent rect. 10 2
29 1477.47 temperature 30 1440 > th dose independent rect. 10 2
34 1477.75 atmosphere 1005 90 < th dose dependent rect. 18 14
37 1478.70 wind 9 14400 > th dose independent rect. 13 1
50 1481.12 atmosphere 1005 270 < th dose dependent rect. 16 15
55 1481.77 temperature 30 1440 < th dose independent rect. 4 8
56 1481.83 atmosphere 1000 270 < th dose independent rect. 15 16
79 1485.24 temperature 30 1440 < th dose independent rect. 18 18
87 1486.52 atmosphere 1000 270 < th dose independent rect. 13 18
88 1486.54 temperature 30 1440 < th dose independent rect. 22 14
89 1486.75 atmosphere 1000 720 < th dose independent rect. 13 11
101 1488.30 atmosphere 1000 720 > th dose independent rect. 13 14
102 1488.38 atmosphere 1000 10 < th dose independent rect. 13 20
125 1490.24 humidity 80 14400 < th dose dependent rect. 4 1
136 1491.69 atmosphere 1000 270 < th dose independent sin 14 NA
158 1494.01 atmosphere 1000 720 > th dose independent rect. 14 9
159 1494.02 atmosphere 1005 270 < th dose dependent sin 13 NA
166 1494.26 atmosphere 1000 720 > th dose independent rect. 14 11
170 1494.66 atmosphere 1000 270 > th dose independent sin 14 NA
181 1495.31 humidity 80 14400 < th dose independent rect. 1 8
208 1496.34 atmosphere 1000 720 > th dose independent sin 17 NA
213 1496.66 atmosphere 1005 270 < th dose dependent rect. 12 20
238 1498.42 atmosphere 1000 720 < th dose independent sin 17 NA
267 1500.50 temperature 25 4320 > th dose independent rect. 1 1
390 1507.75 wind 9 14400 < th dose independent rect. 13 1
394 1508.07 atmosphere 1005 720 < th dose dependent rect. 12 15
404 1508.91 temperature 25 4320 > th dose dependent rect. 23 1
410 1509.38 atmosphere 1005 720 < th dose dependent rect. 12 13
426 1510.26 atmosphere 1005 720 < th dose dependent sin 17 NA
546 1515.49 temperature 30 1440 < th dose independent sin 9 NA
587 1517.63 atmosphere 1000 10 < th dose independent rect. 18 15
601 1518.10 atmosphere 1000 270 < th dose independent rect. 15 23
633 1519.21 temperature 30 1440 > th dose independent sin 8 NA
672 1520.25 atmosphere 1000 270 > th dose independent rect. 5 23
679 1520.54 atmosphere 1000 270 > th dose independent no NA NA
680 1520.56 atmosphere 1005 720 < th dose dependent rect. 15 9
730 1522.50 wind 1 43200 > th dose independent rect. 10 1
735 1522.71 atmosphere 1000 10 < th dose independent rect. 16 17
750 1523.10 atmosphere 1005 720 < th dose dependent rect. 17 7
754 1523.15 temperature 30 1440 > th dose dependent rect. 11 1
762 1523.35 atmosphere 1000 270 < th dose independent rect. 1 23
763 1523.37 atmosphere 1000 270 < th dose independent no NA NA
808 1524.89 atmosphere 1000 270 < th dose independent rect. 18 23
813 1525.04 humidity 80 14400 < th dose dependent rect. 20 1
847 1526.29 atmosphere 1005 270 < th dose dependent rect. 15 22
849 1526.37 atmosphere 1005 720 < th dose dependent rect. 19 2
872 1526.90 humidity 90 4320 < th dose independent rect. 6 1
875 1526.91 atmosphere 1000 10 < th dose independent sin 11 NA
884 1527.10 atmosphere 1000 10 < th dose independent rect. 10 23
905 1527.68 atmosphere 1000 10 > th dose independent sin 11 NA
915 1527.97 radiation 40 14400 > th dose dependent rect. 12 1
953 1529.01 atmosphere 1000 270 > th dose independent rect. 18 23
960 1529.15 atmosphere 1000 720 < th dose independent rect. 19 4
972 1529.51 atmosphere 1000 10 < th dose independent rect. 18 22
994 1529.93 humidity 80 14400 < th dose dependent sin 11 NA