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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0260100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0567) R2 : 0.586
β1 : 2.56 (0.213) R2dD : 0.173 R2D : -0.065
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.34 (0.262) R2dE : 0.102 R2E : -0.0566
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.5 (0.827) R2dD*E : 0.235 R2D*E : -0.151
γ1 : 1.98 (0.116) R2dN8 : 0.392 R2N8 : 0.119
σ : 0.965
deviance : 429.07
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 39.96
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.98
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
417.28 0.951 3.26 2.54 0.468 2.38 -0.499 11.6 1.97 6.04 40 4320 6 --
520.54 1.06 3.47 2.71 0.556 2.35 -0.354 -- 2.28 6.07 20.05 5749 5.94 --
417.84 0.952 3.26 2.53 0.466 2.37 -- 11.5 1.97 6.02 39.96 4320 5.99 --
515.55 1.06 3.43 2.93 0.47 2.06 -- -- 2.28 5.26 20 5748 5.87 --
429.07 0.965 3.27 2.56 -- 2.34 -- 11.5 1.98 -- 39.96 4320 5.98 --
625.31 1.17 3.55 2.95 0.401 -- -0.623 -- 1.78 6.6 -- -- -- --
626.27 1.17 3.55 2.94 0.398 -- -- -- 1.78 6.76 -- -- -- --
526.09 1.07 3.45 2.91 -- 2.06 -- -- 2.27 -- 20.01 5756 5.84 --
713.59 1.24 3.51 -- 0.484 2.28 -- -- 1.95 5.14 22.45 5756 6.26 --
634.55 1.18 3.56 2.95 -- -- -- -- 1.79 -- -- -- -- --
854.2 1.37 3.62 -- 0.436 -- -- -- 1.45 6.35 -- -- -- --
712.04 1.24 3.54 -- -- 2.8 -- -- 1.75 -- 26.29 5758 6.22 --
864.06 1.37 3.63 -- -- -- -- -- 1.46 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 393.17 wind 3.0 43200 < th dose dependent rect. 3 2
2 396.94 wind 3.0 43200 > th dose dependent rect. 5 1
5 398.26 humidity 90.0 43200 > th dose independent rect. 9 1
11 403.09 wind 3.0 43200 < th dose independent rect. 3 1
12 403.15 wind 3.0 43200 > th dose independent rect. 3 1
14 403.63 humidity 80.0 43200 > th dose dependent rect. 9 2
15 403.72 wind 1.0 43200 > th dose dependent rect. 3 4
17 403.78 wind 9.0 43200 < th dose dependent rect. 3 4
19 404.10 wind 1.0 43200 > th dose dependent rect. 3 6
20 404.29 wind 3.0 43200 > th dose dependent rect. 5 3
27 404.89 temperature 10.0 14400 > th dose dependent rect. 13 2
33 405.11 temperature 25.0 14400 > th dose dependent rect. 22 18
56 405.61 humidity 90.0 43200 < th dose independent rect. 9 1
74 405.98 wind 9.0 43200 < th dose dependent rect. 3 6
75 406.00 temperature 25.0 14400 > th dose dependent rect. 6 10
95 406.16 wind 3.0 43200 > th dose independent rect. 3 6
107 406.25 temperature 25.0 14400 > th dose dependent sin 4 NA
124 406.42 temperature 25.0 14400 > th dose dependent rect. 12 21
133 406.47 temperature 25.0 14400 > th dose dependent rect. 6 21
171 406.60 temperature 25.0 14400 > th dose dependent no NA NA
175 406.61 temperature 25.0 14400 > th dose dependent rect. 12 15
339 407.30 wind 1.0 43200 > th dose dependent rect. 3 1
373 407.72 wind 3.0 43200 < th dose independent rect. 3 6
391 407.84 wind 1.0 43200 > th dose dependent rect. 24 9
398 407.90 precipitation 0.1 43200 < th dose independent rect. 19 1
399 407.90 precipitation 0.1 43200 < th dose dependent rect. 19 1
403 407.96 wind 3.0 43200 > th dose independent rect. 7 2
427 408.29 precipitation 0.1 43200 > th dose independent rect. 19 1
488 409.40 wind 1.0 43200 > th dose dependent rect. 3 9
508 409.74 wind 9.0 43200 < th dose dependent rect. 3 9
524 409.93 temperature 25.0 14400 > th dose independent rect. 14 19
549 410.20 wind 9.0 43200 < th dose dependent rect. 24 9
557 410.28 temperature 30.0 14400 < th dose independent rect. 13 2
567 410.35 wind 3.0 43200 > th dose dependent rect. 5 8
568 410.36 precipitation 0.1 43200 > th dose dependent rect. 19 1
612 410.72 wind 3.0 43200 < th dose independent rect. 7 2
625 410.82 temperature 30.0 14400 < th dose independent rect. 12 4
663 411.10 temperature 25.0 14400 < th dose independent rect. 14 18
686 411.27 precipitation 0.1 43200 < th dose independent rect. 16 1
687 411.27 precipitation 0.1 43200 < th dose dependent rect. 16 1
695 411.31 precipitation 0.1 43200 > th dose independent rect. 16 1
710 411.37 humidity 90.0 43200 > th dose dependent rect. 17 4
716 411.40 temperature 30.0 14400 > th dose independent rect. 13 2
733 411.53 temperature 10.0 14400 > th dose dependent sin 21 NA
751 411.62 temperature 25.0 14400 > th dose independent rect. 14 14
769 411.70 precipitation 0.1 43200 > th dose dependent rect. 16 1
775 411.72 humidity 70.0 14400 < th dose independent rect. 18 13
791 411.83 temperature 25.0 14400 > th dose independent rect. 5 4
801 411.88 temperature 30.0 14400 > th dose independent rect. 12 4
807 411.91 humidity 70.0 14400 < th dose independent rect. 18 3
880 412.23 humidity 80.0 14400 > th dose independent rect. 14 7
881 412.24 humidity 70.0 14400 > th dose independent rect. 18 13
903 412.32 humidity 70.0 14400 > th dose independent rect. 18 3
926 412.44 humidity 70.0 14400 > th dose independent rect. 18 9
932 412.45 humidity 70.0 14400 > th dose independent rect. 18 7
946 412.49 temperature 25.0 14400 > th dose independent sin 6 NA
994 412.68 temperature 25.0 14400 < th dose independent rect. 5 4