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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0259700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0269) R2 : 0.00411
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0776 (0.0566) R2dN8 : 0.00531 R2N8 : 0.00411
σ : 0.506
deviance : 117.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.58 0.494 3.05 -0.659 0.188 1.38 -0.176 -11.9 0.0518 9.2 30.1 6 -- --
113.05 0.499 3.01 -0.271 0.192 -0.0298 -0.193 -- 0.045 9.42 30.1 6 -- --
110.69 0.49 3.05 -0.666 0.188 1.37 -- -11.9 0.0517 9.36 30.1 5 -- --
113.08 0.499 3.01 -0.274 0.193 -0.138 -- -- 0.043 9.7 31.4 30 -- --
112.74 0.495 3.06 -0.678 -- 1.37 -- -11.9 0.0507 -- 30 5 -- --
113.06 0.498 3.01 -0.272 0.192 -- -0.196 -- 0.046 9.37 -- -- -- --
113.2 0.498 3.01 -0.279 0.193 -- -- -- 0.0459 9.49 -- -- -- --
114.73 0.499 3.02 -0.162 -- -0.164 -- -- 0.0796 -- 27.47 929 -- --
115.01 0.499 3 -- 0.187 -0.17 -- -- 0.0705 10 31.09 111 -- --
115.38 0.502 3.01 -0.28 -- -- -- -- 0.0465 -- -- -- -- --
115.25 0.502 3 -- 0.193 -- -- -- 0.077 9.6 -- -- -- --
115.5 0.501 3.01 -- -- -0.253 -- -- 0.0875 -- 25.3 841 -- --
117.45 0.506 3.01 -- -- -- -- -- 0.0776 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.32 humidity 80.0 30 < th dose independent rect. 1 1
11 101.32 humidity 80.0 30 < th dose dependent rect. 1 1
40 105.52 radiation 10.0 90 < th dose dependent rect. 10 2
53 106.49 wind 1.0 1440 < th dose independent rect. 17 1
54 106.55 wind 1.0 1440 < th dose dependent rect. 17 1
59 106.87 radiation 10.0 90 < th dose independent rect. 10 2
60 106.96 wind 1.0 1440 > th dose independent rect. 17 1
61 106.99 precipitation 0.1 1440 > th dose independent rect. 12 1
63 106.99 precipitation 0.1 1440 > th dose dependent rect. 12 1
70 107.38 atmosphere 1005.0 10 > th dose dependent rect. 1 1
72 107.43 humidity 90.0 10 < th dose dependent rect. 22 9
86 107.85 temperature 20.0 90 < th dose independent rect. 24 1
100 107.99 wind 7.0 30 < th dose independent rect. 12 23
124 108.39 temperature 30.0 10 > th dose independent rect. 11 1
128 108.42 temperature 20.0 30 > th dose independent rect. 11 1
130 108.43 temperature 30.0 90 > th dose independent rect. 11 1
155 108.68 wind 7.0 30 < th dose independent rect. 11 1
175 108.73 temperature 30.0 10 > th dose dependent rect. 11 1
176 108.74 humidity 90.0 4320 > th dose independent rect. 4 1
183 108.82 humidity 90.0 30 < th dose independent rect. 11 20
189 108.86 temperature 10.0 10 > th dose dependent rect. 11 1
192 108.89 radiation 20.0 270 < th dose independent rect. 8 4
193 108.89 humidity 90.0 10 < th dose dependent rect. 20 11
196 108.91 atmosphere 1000.0 30 > th dose independent rect. 11 1
216 108.93 wind 3.0 30 > th dose independent rect. 11 1
218 108.94 atmosphere 995.0 30 > th dose dependent rect. 11 1
231 109.02 radiation 40.0 10 < th dose dependent rect. 12 1
235 109.03 humidity 90.0 30 < th dose independent rect. 11 1
238 109.04 wind 3.0 4320 > th dose independent rect. 1 1
239 109.04 humidity 50.0 30 > th dose independent rect. 11 1
243 109.05 radiation 10.0 10 > th dose independent rect. 11 1
256 109.14 temperature 10.0 1440 > th dose independent rect. 12 1
260 109.14 atmosphere 995.0 1440 > th dose independent rect. 12 1
261 109.14 temperature 10.0 1440 > th dose independent rect. 13 23
264 109.15 temperature 10.0 30 > th dose independent rect. 11 1
267 109.15 atmosphere 1015.0 30 < th dose independent rect. 11 1
268 109.15 precipitation 0.1 30 < th dose independent rect. 11 1
270 109.15 temperature 10.0 30 > th dose independent rect. 12 23
271 109.15 atmosphere 995.0 30 > th dose independent rect. 12 23
273 109.15 precipitation 0.1 30 < th dose dependent rect. 11 1
306 109.17 wind 3.0 4320 < th dose independent rect. 1 1
308 109.18 precipitation 0.1 30 < th dose independent rect. 12 23
324 109.18 precipitation 0.1 30 < th dose dependent rect. 12 23
330 109.19 radiation 40.0 720 < th dose independent rect. 15 9
331 109.19 radiation 20.0 90 < th dose independent rect. 10 16
388 109.33 humidity 90.0 30 < th dose independent rect. 1 11
390 109.34 wind 9.0 30 < th dose dependent rect. 11 1
404 109.40 radiation 40.0 720 < th dose dependent rect. 24 9
416 109.45 radiation 40.0 90 < th dose dependent rect. 10 16
420 109.46 humidity 50.0 30 > th dose independent rect. 12 23
426 109.48 atmosphere 1005.0 10 > th dose independent rect. 1 1
431 109.49 atmosphere 1015.0 30 < th dose independent rect. 12 23
436 109.51 wind 1.0 30 > th dose independent rect. 11 15
442 109.52 radiation 40.0 270 < th dose dependent rect. 8 4
443 109.53 wind 9.0 14400 > th dose independent rect. 1 1
445 109.53 temperature 30.0 10 > th dose dependent sin 8 NA
446 109.53 wind 9.0 14400 > th dose dependent rect. 1 1
451 109.54 temperature 10.0 1440 > th dose independent rect. 3 9
454 109.54 atmosphere 995.0 1440 > th dose independent rect. 3 9
455 109.54 temperature 10.0 1440 > th dose independent rect. 12 15
462 109.56 wind 9.0 30 < th dose independent rect. 11 15
463 109.56 radiation 20.0 270 < th dose independent rect. 17 19
478 109.57 wind 1.0 1440 < th dose dependent rect. 17 3
482 109.59 wind 9.0 30 < th dose independent rect. 2 9
483 109.59 temperature 10.0 30 > th dose independent rect. 2 9
485 109.59 humidity 50.0 30 > th dose independent rect. 2 9
486 109.59 atmosphere 995.0 30 > th dose independent rect. 2 9
487 109.59 atmosphere 1015.0 30 < th dose independent rect. 2 9
488 109.59 temperature 10.0 30 > th dose independent rect. 11 15
489 109.59 precipitation 0.1 30 < th dose independent rect. 11 15
493 109.59 precipitation 0.1 30 < th dose dependent rect. 11 15
494 109.60 precipitation 0.1 30 < th dose independent rect. 2 9
500 109.60 precipitation 0.1 30 < th dose dependent rect. 2 9
504 109.61 humidity 90.0 10 < th dose independent rect. 1 13
514 109.63 wind 7.0 720 < th dose independent rect. 24 7
515 109.63 temperature 25.0 30 < th dose independent rect. 2 9
527 109.66 atmosphere 995.0 30 > th dose dependent rect. 11 15
528 109.67 temperature 10.0 30 > th dose dependent rect. 12 23
554 109.73 temperature 30.0 30 > th dose independent sin 8 NA
558 109.73 atmosphere 995.0 30 > th dose independent rect. 11 15
575 109.77 radiation 20.0 270 < th dose independent rect. 21 15
582 109.78 radiation 20.0 720 < th dose independent rect. 24 11
586 109.78 wind 9.0 30 < th dose dependent rect. 12 23
589 109.80 precipitation 0.1 720 < th dose independent rect. 24 7
593 109.80 precipitation 0.1 720 < th dose dependent rect. 24 7
612 109.84 humidity 50.0 30 > th dose independent rect. 11 15
614 109.84 precipitation 0.1 720 < th dose independent rect. 19 17
615 109.84 precipitation 0.1 720 < th dose dependent rect. 19 17
627 109.87 radiation 30.0 720 < th dose independent rect. 24 8
677 109.91 atmosphere 1015.0 30 < th dose dependent rect. 12 23
681 109.92 humidity 50.0 10 > th dose dependent rect. 12 23
686 109.93 humidity 90.0 30 < th dose independent rect. 19 12
693 109.94 radiation 10.0 720 < th dose independent rect. 24 7
738 109.99 humidity 90.0 10 < th dose independent rect. 11 16
748 110.00 atmosphere 1015.0 30 < th dose dependent rect. 2 9
771 110.03 temperature 25.0 90 < th dose dependent rect. 24 1
778 110.04 atmosphere 1015.0 30 < th dose independent rect. 11 15
790 110.05 radiation 40.0 720 < th dose dependent rect. 24 12
798 110.07 humidity 70.0 720 > th dose independent rect. 24 7
801 110.07 atmosphere 995.0 10 > th dose dependent rect. 11 22
842 110.12 temperature 10.0 720 > th dose independent rect. 12 7
843 110.12 temperature 10.0 720 > th dose independent rect. 24 7
844 110.12 temperature 30.0 720 < th dose independent rect. 24 7
845 110.12 humidity 50.0 720 > th dose independent rect. 24 7
847 110.12 atmosphere 995.0 720 > th dose independent rect. 24 7
848 110.12 atmosphere 1015.0 720 < th dose independent rect. 12 7
853 110.12 temperature 10.0 720 > th dose independent rect. 7 17
854 110.12 temperature 10.0 720 > th dose independent rect. 19 17
856 110.12 atmosphere 995.0 720 > th dose independent rect. 19 17
861 110.13 atmosphere 995.0 30 > th dose dependent rect. 11 20
865 110.14 temperature 25.0 10 < th dose dependent rect. 1 1
952 110.20 humidity 50.0 720 > th dose independent rect. 19 17
982 110.22 radiation 40.0 270 < th dose dependent rect. 17 19
983 110.23 humidity 70.0 90 > th dose independent rect. 10 1
991 110.23 wind 1.0 720 > th dose independent rect. 12 7