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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0257200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0479) R2 : 0.00156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0852 (0.101) R2dN8 : 0.00201 R2N8 : 0.00156
σ : 0.902
deviance : 373.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.98 0.873 3 0.362 0.246 -0.776 -0.928 3.01 0.138 5.52 2.105 1434 -- --
359.04 0.883 3.04 0.164 0.333 -0.987 -0.736 -- 0.146 5.34 0.8793 1433 -- --
346.95 0.868 3 0.391 0.245 -0.784 -- 3.06 0.169 6.04 2.1 1436 -- --
358.46 0.882 3.04 0.0464 0.27 -0.919 -- -- 0.0388 6.58 0.9904 1433 -- --
350.14 0.872 3 0.393 -- -0.786 -- 3.07 0.162 -- 2.1 1434 -- --
367.77 0.899 3.08 -0.194 0.227 -- -0.984 -- -0.116 5.12 -- -- -- --
369.81 0.901 3.08 -0.192 0.238 -- -- -- -0.111 6.43 -- -- -- --
361.53 0.886 3.04 0.0147 -- -0.926 -- -- 0.0313 -- 1 1428 -- --
358.25 0.882 3.04 -- 0.25 -0.947 -- -- 0.00906 6.42 1 1434 -- --
372.77 0.902 3.08 -0.186 -- -- -- -- -0.106 -- -- -- -- --
370.78 0.901 3.07 -- 0.236 -- -- -- -0.0894 6.48 -- -- -- --
361.42 0.885 3.05 -- -- -0.925 -- -- 0.0222 -- 0.9902 1428 -- --
373.68 0.902 3.08 -- -- -- -- -- -0.0852 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 339.02 wind 1.0 10 < th dose independent rect. 8 1
3 339.02 wind 1.0 10 < th dose dependent rect. 8 1
6 343.81 humidity 80.0 1440 < th dose independent rect. 23 14
7 344.03 humidity 80.0 1440 > th dose independent rect. 23 14
12 344.39 humidity 80.0 1440 > th dose independent rect. 7 6
17 344.49 humidity 80.0 1440 < th dose independent rect. 7 6
37 345.25 humidity 80.0 1440 > th dose independent sin 5 NA
40 345.31 radiation 1.0 1440 > th dose independent rect. 9 1
44 345.46 humidity 80.0 1440 < th dose independent sin 6 NA
50 345.66 radiation 1.0 1440 < th dose independent rect. 1 14
60 345.71 radiation 1.0 1440 < th dose independent rect. 19 20
61 345.72 radiation 1.0 1440 > th dose independent rect. 4 11
93 345.77 radiation 1.0 1440 < th dose independent rect. 5 10
103 345.94 humidity 90.0 1440 > th dose dependent rect. 11 2
107 345.99 humidity 90.0 1440 < th dose independent rect. 11 2
109 346.00 humidity 90.0 1440 > th dose independent rect. 11 2
113 346.12 radiation 1.0 1440 < th dose independent rect. 7 8
116 346.14 radiation 1.0 1440 > th dose independent rect. 7 8
126 346.46 wind 1.0 90 < th dose independent rect. 6 1
127 346.46 radiation 1.0 1440 < th dose independent rect. 9 4
128 346.46 radiation 1.0 1440 < th dose dependent rect. 9 4
132 346.64 radiation 1.0 1440 > th dose independent rect. 9 4
133 346.65 radiation 1.0 1440 < th dose independent rect. 9 1
134 346.65 radiation 1.0 1440 < th dose dependent rect. 9 1
139 346.81 radiation 1.0 1440 < th dose dependent rect. 7 8
143 346.86 temperature 15.0 90 > th dose independent rect. 3 21
174 347.16 radiation 1.0 1440 > th dose independent sin 3 NA
176 347.16 temperature 15.0 720 > th dose independent rect. 3 17
180 347.20 precipitation 0.1 1440 > th dose independent rect. 2 1
181 347.20 precipitation 0.1 1440 > th dose dependent rect. 2 1
185 347.25 radiation 1.0 1440 < th dose independent sin 3 NA
205 347.45 temperature 15.0 720 > th dose independent rect. 8 7
251 348.06 humidity 80.0 1440 > th dose dependent rect. 8 6
263 348.27 temperature 15.0 4320 > th dose independent rect. 7 2
279 348.55 radiation 10.0 1440 > th dose independent sin 6 NA
330 348.91 radiation 20.0 1440 < th dose dependent rect. 8 2
335 349.07 wind 9.0 1440 < th dose independent rect. 8 2
338 349.13 atmosphere 1015.0 4320 > th dose dependent rect. 9 4
346 349.25 temperature 15.0 720 > th dose independent rect. 15 17
348 349.27 radiation 1.0 1440 < th dose dependent rect. 1 15
359 349.28 atmosphere 1015.0 4320 > th dose dependent rect. 8 6
363 349.29 radiation 1.0 1440 < th dose dependent rect. 21 19
371 349.33 temperature 15.0 1440 > th dose independent rect. 8 15
432 349.68 humidity 80.0 10 > th dose independent rect. 7 1
462 349.89 humidity 70.0 1440 > th dose dependent rect. 9 1
467 349.96 temperature 10.0 43200 > th dose independent rect. 8 1
476 350.03 humidity 80.0 90 < th dose independent rect. 2 3
477 350.04 precipitation 0.1 1440 > th dose independent rect. 24 4
480 350.05 atmosphere 1005.0 30 > th dose dependent rect. 3 6
481 350.06 atmosphere 1015.0 4320 > th dose independent rect. 8 7
490 350.12 precipitation 0.1 1440 > th dose dependent rect. 24 4
492 350.13 humidity 80.0 90 < th dose dependent rect. 2 3
496 350.15 atmosphere 1015.0 4320 < th dose independent rect. 8 8
550 350.27 humidity 70.0 1440 > th dose dependent rect. 3 11
593 350.45 precipitation 0.1 1440 < th dose independent rect. 7 3
596 350.45 precipitation 0.1 1440 < th dose dependent rect. 7 3
598 350.47 precipitation 0.1 1440 < th dose independent rect. 5 5
600 350.47 precipitation 0.1 1440 < th dose dependent rect. 5 5
606 350.53 precipitation 0.1 1440 < th dose independent rect. 5 3
608 350.53 precipitation 0.1 1440 < th dose dependent rect. 5 3
622 350.61 atmosphere 1015.0 4320 > th dose independent rect. 11 2
644 350.66 humidity 70.0 1440 > th dose dependent rect. 8 3
655 350.72 radiation 1.0 1440 > th dose independent no NA NA
656 350.72 atmosphere 1015.0 1440 < th dose independent rect. 24 1
707 350.75 temperature 15.0 270 > th dose independent rect. 11 11
710 350.77 atmosphere 1015.0 4320 < th dose independent rect. 11 2
723 350.80 radiation 1.0 1440 > th dose independent rect. 12 23
731 350.86 precipitation 0.1 1440 < th dose independent rect. 24 10
734 350.86 precipitation 0.1 1440 < th dose dependent rect. 24 10
755 350.90 radiation 1.0 1440 < th dose dependent sin 2 NA
766 350.92 radiation 1.0 1440 < th dose independent no NA NA
771 350.92 radiation 1.0 1440 < th dose independent rect. 4 23
783 350.94 atmosphere 1005.0 10 > th dose dependent rect. 6 3
790 350.96 precipitation 0.1 1440 < th dose independent rect. 7 1
802 350.96 precipitation 0.1 1440 < th dose dependent rect. 7 1
809 350.98 temperature 15.0 1440 > th dose independent rect. 8 12
835 351.01 radiation 1.0 1440 < th dose independent rect. 12 23
840 351.03 radiation 1.0 1440 > th dose independent rect. 7 23
851 351.08 precipitation 0.1 1440 < th dose independent rect. 2 8
853 351.08 precipitation 0.1 1440 < th dose dependent rect. 2 8
854 351.09 precipitation 0.1 1440 > th dose independent rect. 2 8
867 351.14 atmosphere 1015.0 1440 < th dose independent rect. 1 8
871 351.14 humidity 90.0 10 < th dose dependent rect. 4 1
873 351.14 precipitation 0.1 1440 > th dose dependent rect. 2 8
883 351.17 precipitation 0.1 1440 > th dose independent rect. 24 10
890 351.18 temperature 15.0 1440 > th dose independent rect. 5 3
909 351.18 radiation 10.0 1440 < th dose dependent rect. 8 20
914 351.20 wind 9.0 1440 < th dose independent rect. 3 7
917 351.20 radiation 1.0 1440 < th dose independent rect. 7 23
927 351.23 temperature 15.0 1440 > th dose independent rect. 5 1
935 351.24 precipitation 0.1 1440 > th dose dependent rect. 24 10
939 351.25 wind 7.0 1440 > th dose independent rect. 7 1
968 351.29 precipitation 0.1 1440 > th dose independent rect. 2 11
977 351.34 precipitation 0.1 1440 > th dose dependent rect. 2 11
983 351.36 precipitation 0.1 1440 > th dose independent rect. 7 2
986 351.36 precipitation 0.1 1440 > th dose dependent rect. 7 2
997 351.41 precipitation 0.1 1440 > th dose independent rect. 24 13