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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0256100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.36 (0.038) R2 : 0.698
β1 : 2.99 (0.141) R2dD : 0.32 R2D : 0.224
β2 : 2.38 (0.0989) R2dC : 0.387 R2C : 0.364
β3 : -1.27 (0.135) R2dE : 0.0633 R2E : 0.0175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.41 (0.0819) R2dN8 : 0.0228 R2N8 : -0.00399
σ : 0.709
deviance : 231.54
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_____
C
peak time of C : 18.2
E
wheather : atmosphere
threshold : 998.9
memory length : 5690
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
225.97 0.706 5.36 3.03 2.38 -1.35 1.48 0.512 0.402 18.2 998.9 5660 -- --
226.17 0.7 5.36 3.01 2.38 -1.27 1.47 -- 0.405 18.2 998.9 5660 -- --
231.3 0.708 5.36 3.02 2.38 -1.36 -- 0.533 0.406 18.2 998.9 5690 -- --
231.54 0.709 5.36 2.99 2.38 -1.27 -- -- 0.41 18.2 998.9 5690 -- --
525.67 1.07 5.31 2.96 -- -1.3 -- 0.284 0.377 -- 998.9 5450 -- --
271.23 0.772 5.34 2.79 2.37 -- 1.53 -- 0.527 18.2 -- -- -- --
276.99 0.779 5.33 2.77 2.38 -- -- -- 0.532 18.2 -- -- -- --
525.64 1.07 5.32 2.93 -- -1.28 -- -- 0.36 -- 998.9 5422 -- --
460.32 0.999 5.42 -- 2.34 -0.793 -- -- 0.134 18.3 998.7 5772 -- --
570.86 1.12 5.29 2.71 -- -- -- -- 0.48 -- -- -- -- --
479.28 1.02 5.4 -- 2.34 -- -- -- 0.223 18.3 -- -- -- --
744.49 1.27 5.38 -- -- -1.02 -- -- 0.0884 -- 998 5361 -- --
763.93 1.29 5.36 -- -- -- -- -- 0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.20 precipitation 0.1 14400 > th dose dependent rect. 17 1
2 226.81 precipitation 0.1 14400 < th dose independent rect. 17 1
3 226.81 precipitation 0.1 14400 < th dose dependent rect. 17 1
4 226.90 precipitation 0.1 14400 > th dose independent rect. 17 1
5 227.92 atmosphere 995.0 14400 > th dose independent rect. 12 1
6 228.59 atmosphere 995.0 14400 > th dose independent rect. 10 3
7 228.59 atmosphere 995.0 14400 < th dose dependent rect. 5 10
9 228.64 atmosphere 995.0 14400 < th dose dependent rect. 4 12
10 228.71 atmosphere 995.0 14400 < th dose independent rect. 4 11
11 228.86 atmosphere 995.0 14400 < th dose dependent rect. 3 14
13 228.90 atmosphere 995.0 14400 < th dose dependent sin 1 NA
17 229.11 atmosphere 995.0 14400 > th dose independent rect. 6 8
18 229.12 atmosphere 995.0 14400 > th dose independent rect. 2 13
19 229.12 atmosphere 995.0 14400 < th dose independent rect. 18 22
22 229.14 atmosphere 995.0 14400 < th dose independent rect. 1 15
35 229.20 atmosphere 995.0 14400 < th dose dependent rect. 14 10
57 229.24 atmosphere 995.0 14400 < th dose dependent sin 19 NA
58 229.25 atmosphere 995.0 14400 > th dose independent rect. 24 16
61 229.27 atmosphere 995.0 14400 > th dose independent rect. 18 22
68 229.32 atmosphere 995.0 14400 > th dose independent sin 4 NA
89 229.47 atmosphere 995.0 14400 < th dose independent sin 3 NA
159 229.91 atmosphere 995.0 14400 > th dose independent rect. 9 23
160 229.92 atmosphere 995.0 14400 > th dose independent rect. 11 21
164 229.93 atmosphere 995.0 14400 > th dose independent no NA NA
176 229.94 atmosphere 995.0 14400 > th dose independent rect. 14 23
180 229.95 atmosphere 995.0 14400 > th dose independent rect. 6 23
194 229.98 atmosphere 995.0 14400 > th dose independent rect. 4 23
196 229.98 atmosphere 995.0 14400 > th dose independent rect. 24 23
203 229.99 atmosphere 995.0 14400 > th dose independent rect. 2 23
208 230.01 atmosphere 995.0 14400 < th dose independent no NA NA
209 230.01 atmosphere 995.0 14400 < th dose independent rect. 14 16
276 230.07 atmosphere 995.0 14400 < th dose independent rect. 1 23
290 230.10 atmosphere 995.0 14400 > th dose independent rect. 14 18
372 230.28 atmosphere 995.0 14400 < th dose independent rect. 15 4
386 230.36 atmosphere 995.0 14400 > th dose independent sin 15 NA
404 230.43 atmosphere 995.0 14400 < th dose independent sin 15 NA
495 230.59 atmosphere 995.0 14400 > th dose independent rect. 9 11
497 230.61 atmosphere 995.0 14400 < th dose dependent rect. 15 4
502 230.63 atmosphere 995.0 14400 > th dose independent rect. 12 8
520 230.69 atmosphere 995.0 14400 < th dose dependent rect. 16 1
592 230.82 wind 5.0 4320 > th dose dependent rect. 20 1
666 231.05 atmosphere 995.0 14400 > th dose independent rect. 15 2
687 231.20 atmosphere 995.0 14400 > th dose independent rect. 15 5
763 231.61 atmosphere 995.0 14400 > th dose independent rect. 18 2
774 231.69 wind 9.0 4320 > th dose dependent rect. 18 3
786 231.83 atmosphere 995.0 14400 < th dose dependent no NA NA
873 232.21 atmosphere 1000.0 4320 < th dose independent rect. 12 1
876 232.25 atmosphere 995.0 14400 > th dose independent rect. 18 4
906 232.49 temperature 20.0 10 > th dose dependent rect. 6 23
917 232.58 wind 7.0 4320 > th dose independent rect. 20 1
937 232.70 temperature 20.0 1440 > th dose independent rect. 21 1
940 232.75 temperature 20.0 4320 < th dose independent rect. 20 2
947 232.82 atmosphere 1000.0 4320 < th dose independent rect. 10 3
950 232.83 atmosphere 995.0 14400 < th dose independent rect. 17 8
952 232.86 atmosphere 1000.0 4320 < th dose independent rect. 10 1
974 232.91 wind 7.0 4320 < th dose independent rect. 20 1