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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0255300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cysteine endopeptidase (Cysteine proteinase (EC 3.4.22.-)-rice).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0226) R2 : 0.0113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.0476) R2dN8 : 0.0146 R2N8 : 0.0113
σ : 0.426
deviance : 83.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.6 0.417 2.95 -0.233 0.0129 -0.388 0.175 1.52 0.0783 7.22 1.099 16 -- --
80.55 0.418 2.93 -0.168 0.0349 -0.274 0.171 -- 0.103 8.02 1 14 -- --
78.67 0.413 2.95 -0.231 0.0229 -0.397 -- 1.49 0.0804 10.9 1.092 16 -- --
80.61 0.418 2.93 -0.164 0.0279 -0.278 -- -- 0.095 8.39 1.049 14 -- --
78.69 0.413 2.95 -0.229 -- -0.394 -- 1.51 0.0784 -- 1.092 16 -- --
82.34 0.425 2.93 -0.134 0.0925 -- 0.0752 -- 0.0924 5.71 -- -- -- --
82.35 0.425 2.93 -0.134 0.0931 -- -- -- 0.092 5.42 -- -- -- --
80.65 0.418 2.93 -0.165 -- -0.286 -- -- 0.0953 -- 1.018 14 -- --
81.31 0.42 2.93 -- 0.0305 -0.259 -- -- 0.113 8.52 1.1 14 -- --
82.8 0.425 2.93 -0.13 -- -- -- -- 0.0943 -- -- -- -- --
82.82 0.426 2.93 -- 0.0908 -- -- -- 0.107 5.48 -- -- -- --
81.36 0.42 2.93 -- -- -0.266 -- -- 0.113 -- 1.057 14 -- --
83.25 0.426 2.93 -- -- -- -- -- 0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.60 wind 9.0 30 < th dose independent rect. 3 23
2 72.70 temperature 25.0 90 > th dose independent rect. 1 1
3 72.71 temperature 25.0 90 > th dose dependent rect. 1 2
5 72.72 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 72.74 wind 3.0 30 < th dose dependent rect. 2 1
10 72.75 precipitation 0.1 30 < th dose independent rect. 3 23
11 72.75 precipitation 0.1 30 < th dose dependent rect. 3 23
14 72.78 wind 1.0 30 < th dose independent rect. 2 1
17 72.78 atmosphere 1005.0 30 > th dose independent rect. 2 1
26 72.81 humidity 80.0 30 > th dose independent rect. 2 1
28 72.82 humidity 70.0 30 > th dose dependent rect. 2 1
31 72.83 temperature 10.0 30 > th dose independent rect. 2 1
33 72.83 temperature 30.0 30 < th dose independent rect. 2 1
34 72.83 humidity 50.0 30 > th dose independent rect. 2 1
37 72.83 atmosphere 995.0 30 > th dose independent rect. 2 1
38 72.83 atmosphere 1010.0 30 < th dose independent rect. 2 1
40 72.83 radiation 1.0 30 < th dose independent rect. 2 1
45 72.83 precipitation 0.1 30 < th dose independent rect. 2 1
46 72.83 temperature 10.0 30 > th dose independent rect. 3 23
47 72.83 humidity 50.0 30 > th dose dependent rect. 2 1
50 72.83 radiation 1.0 30 < th dose dependent rect. 2 1
55 72.83 precipitation 0.1 30 < th dose dependent rect. 2 1
59 72.88 atmosphere 995.0 30 > th dose independent rect. 3 23
62 72.91 atmosphere 1015.0 30 < th dose dependent rect. 2 1
63 72.95 wind 9.0 1440 < th dose independent rect. 3 1
64 72.95 temperature 10.0 1440 > th dose independent rect. 3 1
67 72.95 temperature 30.0 1440 < th dose independent rect. 3 1
71 72.95 humidity 50.0 1440 > th dose independent rect. 3 1
80 72.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
81 72.95 radiation 1.0 1440 < th dose independent rect. 3 1
101 72.95 temperature 10.0 1440 > th dose independent rect. 4 23
104 72.95 radiation 1.0 1440 < th dose dependent rect. 3 1
121 72.97 temperature 30.0 30 < th dose dependent rect. 2 1
130 73.07 wind 1.0 30 > th dose independent rect. 2 1
185 73.98 humidity 50.0 30 > th dose independent rect. 3 23
242 75.65 temperature 30.0 30 < th dose independent rect. 3 23
249 76.23 atmosphere 1015.0 30 < th dose independent rect. 3 23
261 76.80 wind 9.0 30 < th dose independent rect. 16 10
262 76.80 humidity 50.0 30 > th dose independent rect. 16 10
271 76.91 humidity 90.0 90 < th dose independent rect. 2 1
273 76.94 temperature 25.0 270 > th dose independent rect. 23 4
274 76.96 radiation 10.0 10 < th dose independent rect. 16 10
275 76.96 radiation 20.0 10 < th dose dependent rect. 16 10
276 76.96 radiation 40.0 30 < th dose dependent rect. 16 10
279 76.99 precipitation 0.1 10 < th dose independent rect. 2 14
280 76.99 precipitation 0.1 10 < th dose dependent rect. 2 14
286 77.05 atmosphere 995.0 30 > th dose independent rect. 16 10
288 77.06 temperature 10.0 30 > th dose independent rect. 16 10
290 77.06 radiation 40.0 30 < th dose independent rect. 16 10
291 77.06 precipitation 0.1 30 < th dose independent rect. 16 10
292 77.06 temperature 10.0 30 > th dose independent rect. 2 14
294 77.06 atmosphere 995.0 30 > th dose independent rect. 2 14
295 77.06 atmosphere 1015.0 30 < th dose independent rect. 2 14
296 77.06 precipitation 0.1 30 < th dose dependent rect. 16 10
303 77.08 temperature 10.0 1440 > th dose independent rect. 17 10
306 77.08 radiation 30.0 1440 < th dose independent rect. 17 10
312 77.08 temperature 10.0 1440 > th dose independent rect. 3 14
327 77.17 wind 9.0 30 < th dose dependent rect. 3 23
330 77.20 temperature 25.0 270 > th dose dependent rect. 23 4
336 77.27 humidity 50.0 30 > th dose independent rect. 2 14
338 77.29 wind 1.0 30 > th dose independent rect. 16 10
345 77.32 temperature 30.0 10 < th dose independent rect. 16 10
351 77.39 wind 9.0 10 < th dose independent rect. 2 14
354 77.44 atmosphere 1005.0 10 > th dose independent rect. 15 1
367 77.58 atmosphere 995.0 30 > th dose dependent rect. 2 14
382 77.77 atmosphere 1005.0 30 > th dose dependent rect. 15 1
408 77.92 wind 1.0 10 > th dose independent rect. 16 23
497 78.15 humidity 70.0 90 > th dose independent rect. 14 1
528 78.19 temperature 30.0 90 < th dose dependent rect. 14 1
558 78.30 radiation 1.0 90 < th dose independent rect. 14 1
564 78.30 radiation 1.0 90 < th dose dependent rect. 14 1
565 78.30 temperature 20.0 10 < th dose dependent rect. 14 3
579 78.32 wind 1.0 10 > th dose independent sin 15 NA
580 78.32 temperature 20.0 90 < th dose independent rect. 14 2
583 78.33 temperature 20.0 10 < th dose independent rect. 15 1
634 78.35 temperature 10.0 30 > th dose dependent rect. 3 23
640 78.37 humidity 50.0 1440 > th dose independent rect. 18 9
660 78.38 wind 1.0 30 > th dose independent rect. 3 23
662 78.38 temperature 20.0 90 < th dose dependent rect. 12 4
672 78.40 wind 9.0 30 < th dose dependent rect. 16 10
684 78.47 radiation 10.0 10 < th dose independent rect. 14 12
690 78.50 wind 1.0 10 < th dose independent rect. 6 21
708 78.54 temperature 30.0 30 < th dose independent rect. 2 14
710 78.54 atmosphere 995.0 30 > th dose dependent rect. 16 10
765 78.66 radiation 10.0 10 < th dose independent rect. 12 14
800 78.75 wind 9.0 720 < th dose independent rect. 23 16
812 78.78 radiation 1.0 10 < th dose independent rect. 2 15
817 78.78 radiation 10.0 10 < th dose dependent rect. 14 12
818 78.78 radiation 1.0 10 < th dose dependent rect. 2 15
819 78.79 wind 9.0 10 > th dose independent rect. 15 1
831 78.79 wind 9.0 10 > th dose dependent rect. 15 1
849 78.82 radiation 10.0 30 < th dose independent rect. 3 23
863 78.85 temperature 20.0 90 < th dose independent rect. 12 4
875 78.88 humidity 50.0 30 > th dose dependent rect. 16 10
877 78.88 radiation 10.0 30 < th dose dependent rect. 3 23
912 79.00 wind 9.0 720 < th dose independent rect. 7 8
930 79.05 atmosphere 1015.0 30 < th dose independent rect. 16 10
936 79.06 wind 1.0 10 > th dose independent rect. 16 19
957 79.10 atmosphere 1015.0 1440 < th dose independent rect. 3 1
958 79.10 atmosphere 995.0 1440 > th dose independent rect. 18 9
960 79.11 radiation 40.0 30 < th dose dependent rect. 2 14
966 79.13 wind 1.0 30 > th dose dependent rect. 2 1
972 79.15 radiation 40.0 270 < th dose independent rect. 11 16