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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0250100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.72 (0.0481) R2 : 0.739
β1 : 1.3 (0.176) R2dD : 0.0335 R2D : 0.044
β2 : 4.5 (0.131) R2dC : 0.837 R2C : 0.552
β3 : 2.77 (0.209) R2dE : 0.136 R2E : -0.129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0815 (0.106) R2dN8 : 0.000478 R2N8 : -0.00354
σ : 0.884
deviance : 360.05
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_____
C
peak time of C : 20.7
E
wheather : temperature
threshold : 21.7
memory length : 337
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 23.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.11 0.882 6.68 1.53 4.44 2.64 -1.13 1.86 0.177 20.8 21.7 333 23.4 --
354.37 0.877 6.7 1.34 4.45 2.73 -1.41 -- 0.117 20.8 21.9 332 23.5 --
355.68 0.878 6.67 1.68 4.5 2.63 -- 2.62 0.196 20.8 21.38 325 23.3 --
360.05 0.884 6.72 1.3 4.5 2.77 -- -- 0.0815 20.7 21.7 337 23.6 --
550.94 1.09 6.38 0.922 -- 4.46 -- 4.57 0.748 -- -15.1 961 18.3 --
459.82 1.01 6.6 1.73 3.89 -- -1.61 -- 0.515 20 -- -- -- --
467.58 1.01 6.6 1.78 3.89 -- -- -- 0.514 20 -- -- -- --
448.63 0.986 6.53 1.44 -- 4.58 -- -- 0.37 -- -28.08 886 17.5 --
401.84 0.934 6.77 -- 4.63 3.15 -- -- -0.128 20.8 21.5 351 23.7 --
1295.22 1.68 6.5 1.74 -- -- -- -- 0.465 -- -- -- -- --
550.72 1.1 6.65 -- 3.88 -- -- -- 0.316 20 -- -- -- --
486.8 1.03 6.58 -- -- 5.09 -- -- 0.128 -- -92.18 1260 20.7 --
1374.93 1.73 6.55 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 351.07 temperature 20 270 > th dose dependent rect. 23 16
8 356.33 temperature 20 270 > th dose dependent sin 4 NA
25 363.20 temperature 30 270 < th dose dependent rect. 1 21
30 364.14 temperature 25 270 > th dose independent rect. 23 17
56 367.68 temperature 30 270 < th dose dependent sin 5 NA
66 368.19 temperature 20 270 > th dose dependent rect. 7 9
74 369.02 temperature 25 270 < th dose independent rect. 3 9
85 369.96 temperature 10 270 > th dose dependent rect. 6 22
105 372.28 temperature 30 90 < th dose dependent rect. 5 18
116 373.11 temperature 30 270 < th dose dependent rect. 3 8
121 373.27 temperature 30 270 < th dose dependent rect. 2 11
124 373.33 temperature 20 30 > th dose dependent rect. 8 21
151 374.71 temperature 25 270 < th dose independent sin 4 NA
165 375.46 temperature 25 270 > th dose independent sin 3 NA
209 377.08 temperature 30 90 < th dose independent rect. 5 18
210 377.12 temperature 25 270 > th dose independent rect. 7 9
218 377.40 temperature 25 270 < th dose independent rect. 3 17
318 380.34 temperature 25 10 > th dose dependent rect. 8 12
394 382.15 temperature 30 90 < th dose dependent rect. 5 8
521 384.37 temperature 25 10 > th dose dependent rect. 8 16
662 386.20 atmosphere 995 30 > th dose dependent rect. 5 18
730 387.06 temperature 20 720 > th dose dependent rect. 8 1
925 389.38 temperature 30 270 < th dose dependent rect. 14 23
938 389.52 temperature 30 270 < th dose dependent rect. 16 23
939 389.54 temperature 30 270 < th dose dependent no NA NA
967 389.82 temperature 10 270 > th dose dependent no NA NA