Os11g0249900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Herpesvirus glycoprotein D family protein.
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Os11g0249900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Herpesvirus glycoprotein D family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.75 | 0.269 | 9.5 | 1.13 | 0.665 | 0.771 | 0.0498 | 0.676 | 0.699 | 21.7 | 29.91 | 3 | -- | -- |
| 33.3 | 0.271 | 9.49 | 1.24 | 0.667 | 0.742 | 0.241 | -- | 0.723 | 21.9 | 29.91 | 3 | -- | -- |
| 32.76 | 0.267 | 9.5 | 1.13 | 0.665 | 0.775 | -- | 0.691 | 0.699 | 21.7 | 29.94 | 3 | -- | -- |
| 33.43 | 0.269 | 9.49 | 1.24 | 0.666 | 0.788 | -- | -- | 0.723 | 21.7 | 30.72 | 3 | -- | -- |
| 56.98 | 0.352 | 9.47 | 1.19 | -- | 1.08 | -- | 0.725 | 0.754 | -- | 29.76 | 2 | -- | -- |
| 40.67 | 0.299 | 9.52 | 1.07 | 0.806 | -- | 0.456 | -- | 0.58 | 23 | -- | -- | -- | -- |
| 41.51 | 0.302 | 9.52 | 1.06 | 0.806 | -- | -- | -- | 0.579 | 22.9 | -- | -- | -- | -- |
| 57.66 | 0.354 | 9.45 | 1.32 | -- | 1.09 | -- | -- | 0.789 | -- | 29.84 | 2 | -- | -- |
| 69.91 | 0.392 | 9.54 | -- | 0.759 | 0.319 | -- | -- | 0.499 | 22.6 | 47.92 | 2 | -- | -- |
| 81.78 | 0.423 | 9.5 | 1.07 | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
| 70.97 | 0.394 | 9.55 | -- | 0.814 | -- | -- | -- | 0.461 | 23 | -- | -- | -- | -- |
| 100.97 | 0.468 | 9.5 | -- | -- | 0.859 | -- | -- | 0.563 | -- | 44.26 | 2 | -- | -- |
| 112.24 | 0.494 | 9.53 | -- | -- | -- | -- | -- | 0.465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 3 | 31.73 | temperature | 30.0 | 10 | < th | dose dependent | sin | 18 | NA |
| 22 | 32.51 | temperature | 10.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 37 | 32.70 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 38 | 32.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 43 | 32.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 47 | 32.83 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 55 | 32.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 56 | 32.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 57 | 32.92 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 72 | 33.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 75 | 33.02 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 76 | 33.03 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 80 | 33.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 82 | 33.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 11 |
| 86 | 33.08 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 94 | 33.12 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 103 | 33.20 | temperature | 25.0 | 30 | < th | dose independent | sin | 19 | NA |
| 123 | 33.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 133 | 33.36 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 134 | 33.36 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 135 | 33.36 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 143 | 33.39 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 13 |
| 146 | 33.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 149 | 33.41 | temperature | 25.0 | 10 | < th | dose independent | rect. | 9 | 15 |
| 163 | 33.44 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 167 | 33.46 | temperature | 25.0 | 270 | < th | dose independent | sin | 21 | NA |
| 172 | 33.47 | atmosphere | 1015.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 181 | 33.48 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 195 | 33.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 207 | 33.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 315 | 33.77 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 392 | 33.93 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 398 | 33.95 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 414 | 33.97 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 415 | 33.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 416 | 33.97 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 438 | 34.01 | temperature | 20.0 | 30 | > th | dose independent | sin | 7 | NA |
| 465 | 34.04 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 478 | 34.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 480 | 34.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 482 | 34.07 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 499 | 34.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 512 | 34.10 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 553 | 34.15 | temperature | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 565 | 34.16 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 611 | 34.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 668 | 34.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 3 |
| 678 | 34.29 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 716 | 34.33 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 768 | 34.38 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 830 | 34.43 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 907 | 34.50 | temperature | 25.0 | 30 | > th | dose independent | sin | 20 | NA |
| 919 | 34.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 14 |
| 958 | 34.54 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 23 | 3 |