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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0249300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.035) R2 : 0.303
β1 : -0.962 (0.129) R2dD : 0.0953 R2D : 0.068
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.85 (0.152) R2dE : 0.238 R2E : 0.2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0809 (0.0751) R2dN8 : 0.00232 R2N8 : 0.00153
σ : 0.654
deviance : 197.22
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8569
memory length : 103
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.97
open length of G : 0.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.15 0.656 3.22 -1.23 0.262 2.4 -0.239 -5.78 0.0624 5.3 0.8941 103 3.98 0.772
205.84 0.668 3.25 -1.2 0.289 2.43 -0.212 -- 0.0896 5.27 0.09764 110 4.01 0.799
191.98 0.645 3.22 -1.25 0.254 2.36 -- -5.81 0.0693 5.08 0.7173 119 3.97 0.583
196.12 0.652 3.19 -0.959 0.317 1.72 -- -- 0.0669 5.01 0.6101 93 4.16 0.511
194.35 0.649 3.22 -1.22 -- 2.55 -- -5.57 0.0994 -- 0.7293 102 3.97 0.583
242.77 0.73 3.2 -0.877 0.619 -- 0.324 -- -0.0351 5.45 -- -- -- --
243.02 0.73 3.21 -0.877 0.62 -- -- -- -0.0366 5.39 -- -- -- --
197.22 0.654 3.19 -0.962 -- 1.85 -- -- 0.0809 -- 0.8569 103 3.97 0.6
221.23 0.693 3.2 -- 0.342 1.56 -- -- 0.144 4.93 0.7747 94 4.14 0.511
263.08 0.758 3.21 -0.856 -- -- -- -- -0.0213 -- -- -- -- --
263.27 0.759 3.18 -- 0.606 -- -- -- 0.061 5.45 -- -- -- --
222.47 0.695 3.17 -- -- 1.87 -- -- 0.177 -- 0.8196 95 3.95 0.61
282.39 0.784 3.19 -- -- -- -- -- 0.0737 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.60 wind 1.0 90 < th dose dependent rect. 4 1
2 200.35 wind 1.0 90 < th dose independent rect. 4 1
5 206.88 temperature 30.0 720 > th dose dependent rect. 18 1
19 206.89 humidity 50.0 1440 < th dose independent rect. 16 1
20 207.17 humidity 50.0 1440 < th dose dependent rect. 16 1
39 210.44 humidity 90.0 90 > th dose dependent rect. 4 1
47 212.32 humidity 70.0 720 < th dose independent rect. 19 12
50 212.56 humidity 50.0 1440 > th dose independent rect. 16 1
52 212.84 wind 3.0 10 < th dose dependent rect. 4 2
55 213.22 humidity 70.0 720 < th dose independent rect. 19 1
66 213.28 humidity 70.0 720 < th dose dependent rect. 19 12
68 213.54 humidity 70.0 720 < th dose dependent rect. 19 1
81 213.63 temperature 20.0 90 > th dose independent rect. 4 1
82 213.68 humidity 90.0 90 > th dose independent rect. 4 1
98 213.92 wind 1.0 30 < th dose independent rect. 4 8
100 214.21 wind 1.0 30 < th dose independent rect. 4 6
101 214.22 temperature 20.0 90 > th dose dependent rect. 4 1
103 214.27 wind 1.0 30 < th dose independent rect. 24 6
107 214.49 humidity 70.0 720 > th dose independent rect. 19 8
113 214.77 humidity 90.0 10 > th dose independent rect. 4 2
114 214.77 wind 1.0 30 < th dose independent rect. 2 10
115 214.77 humidity 70.0 720 < th dose dependent rect. 18 14
117 215.07 wind 1.0 30 < th dose independent rect. 2 8
122 215.28 temperature 25.0 90 < th dose independent rect. 4 1
147 216.11 wind 1.0 30 < th dose independent rect. 24 12
151 216.22 temperature 30.0 720 > th dose independent rect. 18 1
170 216.37 wind 1.0 90 < th dose dependent rect. 4 8
172 216.47 humidity 90.0 10 > th dose dependent rect. 4 2
182 216.80 wind 1.0 30 > th dose independent sin 6 NA
225 217.22 wind 1.0 10 < th dose dependent rect. 4 8
241 217.41 wind 1.0 10 < th dose dependent rect. 4 6
277 217.86 wind 1.0 90 < th dose dependent rect. 4 14
301 218.10 temperature 25.0 720 > th dose dependent rect. 21 1
302 218.14 humidity 60.0 1440 > th dose independent rect. 18 11
303 218.19 wind 7.0 1440 < th dose independent rect. 5 1
305 218.19 temperature 10.0 1440 > th dose independent rect. 5 1
308 218.19 temperature 30.0 1440 < th dose independent rect. 5 1
312 218.19 humidity 50.0 1440 > th dose independent rect. 5 1
321 218.19 atmosphere 995.0 1440 > th dose independent rect. 5 1
322 218.19 atmosphere 1015.0 1440 < th dose independent rect. 5 1
323 218.19 radiation 20.0 1440 < th dose independent rect. 5 1
332 218.19 temperature 10.0 1440 > th dose independent rect. 6 23
340 218.29 humidity 60.0 1440 > th dose independent rect. 18 2
341 218.35 humidity 60.0 1440 > th dose independent rect. 18 5
349 218.44 humidity 60.0 1440 > th dose independent rect. 18 14
352 218.47 temperature 30.0 1440 < th dose independent rect. 18 11
358 218.60 temperature 30.0 1440 < th dose independent rect. 18 6
361 218.73 temperature 30.0 1440 < th dose independent rect. 18 14
365 218.82 temperature 30.0 1440 < th dose independent rect. 18 9
386 218.91 atmosphere 1005.0 90 > th dose independent rect. 4 1
405 218.99 temperature 30.0 1440 < th dose independent rect. 18 2
407 219.00 wind 1.0 10 < th dose dependent rect. 2 10
493 219.89 wind 1.0 30 < th dose independent rect. 4 14
510 220.07 wind 1.0 10 < th dose dependent rect. 4 14
515 220.10 wind 1.0 10 < th dose dependent rect. 4 12
539 220.18 wind 1.0 30 < th dose independent sin 5 NA
601 220.90 wind 1.0 30 < th dose independent rect. 4 19
611 221.00 humidity 50.0 1440 > th dose independent rect. 16 18
614 221.03 radiation 1.0 90 < th dose independent rect. 4 1
624 221.07 wind 9.0 90 < th dose independent rect. 5 23
625 221.07 radiation 10.0 90 < th dose dependent rect. 4 1
636 221.13 wind 1.0 30 < th dose independent rect. 2 16
647 221.15 humidity 50.0 1440 < th dose independent rect. 16 18
655 221.18 precipitation 0.1 90 < th dose independent rect. 4 1
664 221.18 precipitation 0.1 90 < th dose dependent rect. 4 1
668 221.19 temperature 10.0 90 > th dose independent rect. 4 1
671 221.19 humidity 50.0 90 > th dose independent rect. 4 1
676 221.19 atmosphere 1010.0 90 < th dose independent rect. 4 1
699 221.19 temperature 10.0 90 > th dose independent rect. 5 23
747 221.38 humidity 90.0 270 > th dose dependent rect. 1 4
767 221.54 humidity 50.0 1440 < th dose dependent rect. 16 19
802 221.62 humidity 90.0 30 > th dose dependent rect. 4 12
814 221.64 atmosphere 1015.0 90 < th dose dependent rect. 4 1
862 221.89 humidity 90.0 10 > th dose dependent rect. 4 16
913 222.15 wind 1.0 90 < th dose dependent rect. 16 13
932 222.31 wind 1.0 30 < th dose independent rect. 24 18
973 222.42 wind 1.0 90 < th dose dependent rect. 14 15