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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0249000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0363) R2 : 5.01e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0116 (0.0765) R2dN8 : 6.46e-05 R2N8 : 5.01e-05
σ : 0.684
deviance : 214.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.27 0.676 2.92 0.0404 0.243 -0.639 0.0506 1.23 0.0294 22.7 82.05 3846 -- --
208.92 0.673 2.91 -0.035 0.233 -0.564 0.24 -- 0.0681 22.8 91.53 3913 -- --
207.26 0.671 2.92 0.0399 0.246 -0.637 -- 1.24 0.0272 22.6 82 3812 -- --
209.06 0.673 2.92 -0.0371 0.233 -0.566 -- -- 0.0707 22.7 90.38 3859 -- --
209.5 0.674 2.92 0.0177 -- -0.631 -- 1.1 0.0423 -- 81.04 4356 -- --
212.94 0.684 2.93 -0.0283 0.174 -- 0.186 -- -0.016 23.3 -- -- -- --
213.06 0.684 2.93 -0.0352 0.175 -- -- -- -0.0162 22.9 -- -- -- --
210.8 0.676 2.9 -0.0597 -- -0.579 -- -- 0.109 -- 96 4407 -- --
209.11 0.673 2.92 -- 0.234 -0.568 -- -- 0.0718 22.7 90 3853 -- --
214.96 0.685 2.93 -0.0315 -- -- -- -- -0.0151 -- -- -- -- --
213.1 0.683 2.93 -- 0.175 -- -- -- -0.0123 22.9 -- -- -- --
210.9 0.676 2.9 -- -- -0.573 -- -- 0.113 -- 96 4407 -- --
214.99 0.684 2.93 -- -- -- -- -- -0.0116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.23 humidity 90 10 > th dose dependent rect. 20 1
3 199.58 humidity 90 10 > th dose dependent rect. 17 4
11 199.78 wind 7 90 > th dose independent rect. 21 12
22 201.33 wind 7 90 > th dose independent rect. 21 8
26 201.44 wind 7 90 > th dose independent rect. 21 5
37 201.65 wind 7 90 > th dose dependent rect. 21 12
38 202.01 humidity 90 10 > th dose independent rect. 17 3
64 202.54 wind 7 90 > th dose dependent rect. 21 8
69 202.58 wind 7 90 > th dose dependent rect. 21 5
91 203.00 humidity 90 10 > th dose dependent rect. 8 13
104 203.17 atmosphere 1005 10 < th dose independent rect. 20 1
138 203.71 humidity 80 270 > th dose independent rect. 18 1
162 204.02 humidity 80 270 > th dose independent rect. 16 4
195 204.30 humidity 90 10 < th dose independent rect. 4 1
219 204.64 temperature 25 30 > th dose independent rect. 4 1
242 204.92 temperature 20 90 < th dose dependent rect. 14 8
247 204.97 wind 1 90 < th dose dependent rect. 16 5
259 205.07 temperature 20 90 < th dose dependent rect. 17 5
267 205.13 wind 1 90 < th dose dependent rect. 20 1
271 205.17 humidity 90 1440 < th dose independent rect. 17 1
300 205.38 temperature 25 90 > th dose dependent rect. 4 1
303 205.43 humidity 90 10 > th dose independent rect. 8 14
328 205.64 wind 3 10 < th dose independent rect. 10 11
329 205.64 humidity 80 1440 > th dose dependent rect. 17 1
359 205.89 wind 5 10 < th dose dependent rect. 10 12
375 205.96 humidity 50 4320 > th dose dependent rect. 18 2
381 205.99 radiation 30 30 < th dose independent rect. 9 2
382 205.99 humidity 90 4320 < th dose dependent rect. 18 2
391 206.02 humidity 90 1440 > th dose independent rect. 17 1
431 206.27 wind 3 10 > th dose independent sin 22 NA
445 206.32 humidity 80 4320 > th dose independent rect. 17 3
455 206.39 wind 3 10 < th dose independent sin 21 NA
469 206.44 wind 3 10 > th dose independent rect. 8 11
472 206.44 wind 5 10 < th dose dependent rect. 22 11
479 206.49 wind 1 30 > th dose dependent rect. 4 1
482 206.50 atmosphere 1000 90 < th dose dependent rect. 10 1
494 206.53 wind 5 10 < th dose dependent sin 20 NA
497 206.54 wind 7 720 > th dose dependent rect. 22 2
527 206.63 wind 3 10 > th dose independent rect. 6 13
539 206.66 wind 1 30 > th dose dependent rect. 20 15
549 206.68 wind 3 10 < th dose independent rect. 4 17
570 206.72 wind 5 90 > th dose dependent rect. 1 8
581 206.76 wind 1 10 > th dose independent rect. 20 15
589 206.78 wind 3 10 > th dose independent rect. 8 15
592 206.78 radiation 40 30 < th dose dependent rect. 9 2
597 206.79 radiation 1 43200 < th dose dependent rect. 1 3
627 206.86 temperature 25 4320 < th dose independent rect. 4 2
633 206.88 temperature 25 4320 > th dose independent rect. 4 2
634 206.88 wind 7 90 > th dose independent rect. 2 7
650 206.92 radiation 1 43200 < th dose dependent rect. 1 1
662 206.95 atmosphere 1000 10 > th dose independent rect. 20 15
675 206.98 wind 7 43200 < th dose independent rect. 20 1
687 207.00 wind 9 43200 > th dose dependent rect. 20 2
696 207.01 wind 1 10 > th dose dependent rect. 11 12
704 207.03 radiation 10 1440 > th dose independent rect. 5 1
717 207.03 radiation 10 1440 > th dose dependent rect. 5 1
731 207.04 wind 9 43200 > th dose independent rect. 20 2
760 207.07 radiation 1 43200 < th dose dependent rect. 23 5
794 207.14 temperature 25 4320 > th dose dependent rect. 4 3
803 207.16 wind 3 10 < th dose dependent rect. 22 9
809 207.18 humidity 70 4320 > th dose independent rect. 9 1
817 207.19 humidity 90 10 > th dose independent sin 19 NA
820 207.19 humidity 80 10 > th dose independent rect. 19 16
842 207.22 wind 1 10 > th dose dependent rect. 8 15
843 207.22 humidity 80 4320 < th dose dependent rect. 14 15
848 207.23 humidity 50 30 > th dose dependent rect. 19 16
849 207.24 wind 3 10 > th dose independent rect. 2 2
853 207.24 wind 3 10 < th dose independent rect. 22 11
854 207.24 wind 3 10 > th dose independent rect. 6 17
865 207.25 temperature 25 4320 > th dose dependent rect. 5 1
871 207.26 radiation 30 4320 > th dose dependent rect. 15 1
879 207.27 humidity 70 14400 > th dose independent rect. 12 4
899 207.28 wind 9 43200 > th dose dependent rect. 17 11
906 207.29 wind 9 43200 > th dose dependent rect. 17 4
915 207.29 wind 1 10 > th dose dependent rect. 11 9
952 207.32 radiation 30 1440 > th dose independent rect. 16 1
977 207.33 wind 9 43200 > th dose independent rect. 20 8
978 207.33 wind 3 10 > th dose independent rect. 10 13
985 207.33 wind 9 43200 > th dose dependent rect. 16 15
992 207.34 humidity 90 10 > th dose dependent sin 20 NA