Os11g0246300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0246300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.41 | 0.34 | 11.3 | -1.35 | 0.569 | -0.463 | -0.678 | 2.85 | -0.518 | 19.7 | 25.1 | 4491 | -- | -- |
| 53.43 | 0.34 | 11.2 | -0.964 | 0.573 | -0.539 | -0.751 | -- | -0.463 | 19.7 | 21.3 | 17562 | -- | -- |
| 53.63 | 0.341 | 11.3 | -1.32 | 0.571 | -0.462 | -- | 2.81 | -0.518 | 19.8 | 25.3 | 4602 | -- | -- |
| 54.05 | 0.342 | 11.2 | -1.1 | 0.56 | -0.72 | -- | -- | -0.501 | 19.8 | 20.2 | 17596 | -- | -- |
| 69.15 | 0.387 | 11.2 | -1.33 | -- | -0.515 | -- | 2.7 | -0.558 | -- | 25.2 | 3607 | -- | -- |
| 60.03 | 0.363 | 11.1 | -0.477 | 0.573 | -- | -0.635 | -- | -0.255 | 19.8 | -- | -- | -- | -- |
| 61.18 | 0.366 | 11.1 | -0.461 | 0.572 | -- | -- | -- | -0.256 | 20 | -- | -- | -- | -- |
| 71.24 | 0.393 | 11.2 | -1.13 | -- | -0.75 | -- | -- | -0.514 | -- | 19.79 | 16598 | -- | -- |
| 65.06 | 0.378 | 11.1 | -- | 0.545 | -0.159 | -- | -- | -0.27 | 20.7 | 25.5 | 8833 | -- | -- |
| 79.04 | 0.415 | 11.1 | -0.467 | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
| 66.78 | 0.382 | 11.1 | -- | 0.575 | -- | -- | -- | -0.205 | 19.9 | -- | -- | -- | -- |
| 81.7 | 0.421 | 11.1 | -- | -- | -0.29 | -- | -- | -0.296 | -- | 25.47 | 2073 | -- | -- |
| 84.79 | 0.43 | 11.1 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 4 | 50.04 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 8 | 50.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 9 | 50.23 | wind | 3.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 14 | 50.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 17 | 50.55 | wind | 3.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 26 | 50.84 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 30 | 50.90 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 34 | 51.07 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 44 | 51.17 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 45 | 51.17 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 47 | 51.22 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 53 | 51.26 | temperature | 25.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 54 | 51.26 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 55 | 51.27 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 69 | 51.33 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 71 | 51.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 13 |
| 73 | 51.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 78 | 51.37 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 93 | 51.43 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 102 | 51.46 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 103 | 51.48 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 111 | 51.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 112 | 51.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 117 | 51.51 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 130 | 51.54 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 142 | 51.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 11 |
| 147 | 51.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 11 |
| 148 | 51.58 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 163 | 51.61 | temperature | 25.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 174 | 51.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 195 | 51.66 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 199 | 51.66 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 227 | 51.73 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 234 | 51.74 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 7 | 20 |
| 240 | 51.76 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 262 | 51.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 271 | 51.81 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 284 | 51.83 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 288 | 51.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 11 |
| 290 | 51.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 291 | 51.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 294 | 51.83 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 7 | 21 |
| 303 | 51.84 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 11 | 16 |
| 307 | 51.84 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 316 | 51.85 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 321 | 51.86 | temperature | 15.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 359 | 51.88 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 362 | 51.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 373 | 51.90 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 376 | 51.90 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 381 | 51.91 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 382 | 51.91 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 385 | 51.91 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 400 | 51.92 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 406 | 51.92 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 412 | 51.93 | temperature | 15.0 | 14400 | < th | dose independent | no | NA | NA |
| 422 | 51.93 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 424 | 51.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 428 | 51.94 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 436 | 51.94 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 438 | 51.94 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 493 | 51.96 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 495 | 51.97 | temperature | 15.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 526 | 51.98 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 564 | 52.01 | temperature | 15.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 567 | 52.01 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 592 | 52.02 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 603 | 52.02 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 651 | 52.05 | temperature | 15.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 655 | 52.05 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 672 | 52.06 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 784 | 52.13 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 862 | 52.18 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 916 | 52.21 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 918 | 52.21 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 936 | 52.22 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 965 | 52.22 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 984 | 52.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 994 | 52.23 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 995 | 52.23 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 998 | 52.24 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 999 | 52.24 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 12 | 1 |