FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0245200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Somatic embryogenesis receptor kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.6 (0.0448) R2 : 0.334
β1 : 1.8 (0.169) R2dD : 0.181 R2D : 0.048
β2 : 0.792 (0.114) R2dC : 0.0705 R2C : 0.0343
β3 : -1.37 (0.125) R2dE : 0.192 R2E : 0.0566
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.502 (0.0957) R2dN8 : 0.0497 R2N8 : 0.00827
σ : 0.838
deviance : 323.58
__
_____
C
peak time of C : 3.59
E
wheather : temperature
threshold : 26.62
memory length : 1369
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.3 0.828 3.59 1.98 0.79 -1.51 2.04 0.549 0.513 2.77 26.6 1307 -- --
310.33 0.82 3.61 1.84 0.79 -1.45 2.05 -- 0.476 2.77 26.72 1308 -- --
323.17 0.837 3.57 2.09 0.783 -1.5 -- 1.21 0.529 3.51 26.7 1363 -- --
323.58 0.838 3.6 1.8 0.792 -1.37 -- -- 0.502 3.59 26.62 1369 -- --
345.78 0.866 3.57 2.16 -- -1.7 -- 1.34 0.606 -- 26.3 1745 -- --
401.05 0.939 3.62 1.37 0.587 -- 1.66 -- 0.446 2.97 -- -- -- --
408.95 0.947 3.62 1.33 0.628 -- -- -- 0.435 3.93 -- -- -- --
346.72 0.867 3.6 1.82 -- -1.59 -- -- 0.555 -- 25.95 1744 -- --
400.24 0.932 3.68 -- 0.795 -1.05 -- -- 0.145 3.47 28.5 1292 -- --
430.54 0.97 3.62 1.35 -- -- -- -- 0.451 -- -- -- -- --
455.43 0.998 3.65 -- 0.654 -- -- -- 0.287 3.9 -- -- -- --
427.58 0.963 3.66 -- -- -1.23 -- -- 0.275 -- 27 1773 -- --
478.89 1.02 3.65 -- -- -- -- -- 0.301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.66 humidity 70 720 > th dose dependent rect. 19 2
2 303.44 humidity 60 720 > th dose dependent rect. 17 5
5 303.97 humidity 90 1440 < th dose dependent rect. 19 2
40 308.23 humidity 90 1440 < th dose dependent rect. 16 7
45 308.56 humidity 80 720 > th dose independent rect. 16 6
71 310.32 temperature 25 1440 > th dose dependent rect. 18 1
78 311.00 temperature 25 1440 > th dose dependent rect. 17 3
81 311.12 humidity 70 14400 < th dose independent rect. 18 2
97 311.57 humidity 80 720 > th dose independent rect. 19 2
102 311.72 humidity 70 4320 > th dose independent rect. 19 1
105 311.80 temperature 25 1440 > th dose dependent rect. 13 8
106 311.87 humidity 70 4320 > th dose independent rect. 19 5
110 312.00 humidity 70 4320 > th dose independent rect. 19 7
118 312.12 humidity 70 4320 > th dose independent rect. 19 11
124 312.27 temperature 30 1440 < th dose independent rect. 17 1
134 312.48 humidity 70 14400 < th dose dependent rect. 18 1
150 312.87 temperature 30 1440 > th dose independent rect. 17 1
157 312.90 temperature 30 14400 > th dose dependent rect. 17 2
178 313.05 temperature 30 1440 > th dose independent rect. 14 5
195 313.13 temperature 30 1440 < th dose independent rect. 14 5
196 313.14 temperature 30 1440 < th dose independent rect. 14 18
201 313.18 temperature 30 1440 < th dose independent rect. 14 9
210 313.23 temperature 30 1440 < th dose independent rect. 14 12
216 313.36 temperature 25 1440 > th dose dependent rect. 13 1
219 313.40 temperature 30 1440 < th dose independent rect. 16 8
229 313.48 temperature 30 1440 < th dose independent rect. 16 13
230 313.49 temperature 30 1440 < th dose independent rect. 16 5
248 313.62 temperature 30 1440 > th dose independent rect. 16 3
284 313.86 temperature 30 1440 < th dose independent sin 15 NA
285 313.86 temperature 25 1440 > th dose dependent sin 18 NA
287 313.92 temperature 30 1440 > th dose independent sin 14 NA
316 314.16 temperature 25 1440 > th dose dependent rect. 13 20
347 314.35 temperature 30 14400 < th dose independent rect. 18 1
348 314.35 temperature 30 14400 < th dose independent rect. 18 6
350 314.35 temperature 30 14400 < th dose independent rect. 18 14
393 314.44 temperature 30 14400 < th dose independent rect. 18 8
520 315.01 humidity 50 1440 > th dose dependent sin 16 NA
555 315.10 humidity 80 1440 < th dose independent rect. 16 5
656 315.50 humidity 90 1440 < th dose dependent sin 15 NA
727 315.69 humidity 80 1440 > th dose independent rect. 10 12
744 315.73 temperature 30 1440 < th dose independent rect. 17 19
771 315.83 temperature 30 14400 < th dose independent rect. 15 4
775 315.84 temperature 30 14400 < th dose independent rect. 15 8
777 315.84 temperature 30 14400 < th dose independent rect. 15 17
783 315.85 radiation 20 1440 > th dose independent rect. 16 15
805 315.92 temperature 30 14400 > th dose independent rect. 15 4
824 315.93 temperature 25 1440 > th dose dependent no NA NA
879 316.13 temperature 30 1440 < th dose independent rect. 17 23
880 316.15 temperature 25 1440 > th dose dependent rect. 16 23
894 316.24 temperature 30 14400 > th dose independent rect. 17 2
968 316.35 temperature 30 1440 < th dose independent rect. 5 14
971 316.36 temperature 30 1440 < th dose independent rect. 1 18
972 316.36 temperature 30 1440 < th dose independent rect. 4 19
987 316.38 temperature 30 1440 < th dose independent rect. 7 12
994 316.38 temperature 30 1440 < th dose independent rect. 22 21
995 316.38 temperature 30 1440 < th dose independent rect. 1 22