Os11g0242700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0242700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.48 | 0.344 | 10.7 | 0.727 | 1.57 | 1.51 | 0.0909 | -0.492 | 0.264 | 10.3 | 16.3 | 497 | -- | -- |
| 53.67 | 0.341 | 10.7 | 0.797 | 1.58 | 1.53 | 0.154 | -- | 0.28 | 10.2 | 16.15 | 491 | -- | -- |
| 53.51 | 0.341 | 10.7 | 0.734 | 1.57 | 1.5 | -- | -0.485 | 0.265 | 10.3 | 16.37 | 489 | -- | -- |
| 53.73 | 0.341 | 10.7 | 0.822 | 1.56 | 1.5 | -- | -- | 0.289 | 10.3 | 16.2 | 485 | -- | -- |
| 133.45 | 0.541 | 10.8 | 0.713 | -- | 1.96 | -- | -0.361 | 0.215 | -- | 16.37 | 489 | -- | -- |
| 83.46 | 0.428 | 10.7 | 1.18 | 1.37 | -- | 0.0672 | -- | 0.529 | 11.3 | -- | -- | -- | -- |
| 83.48 | 0.428 | 10.7 | 1.18 | 1.37 | -- | -- | -- | 0.529 | 11.3 | -- | -- | -- | -- |
| 133.21 | 0.54 | 10.8 | 0.784 | -- | 1.8 | -- | -- | 0.233 | -- | 18.15 | 5981 | -- | -- |
| 69.46 | 0.388 | 10.7 | -- | 1.66 | 1.94 | -- | -- | 0.16 | 10.2 | 14.67 | 557 | -- | -- |
| 200.18 | 0.661 | 10.7 | 1.15 | -- | -- | -- | -- | 0.516 | -- | -- | -- | -- | -- |
| 120.25 | 0.513 | 10.7 | -- | 1.35 | -- | -- | -- | 0.398 | 11.2 | -- | -- | -- | -- |
| 148.28 | 0.569 | 10.8 | -- | -- | 2.38 | -- | -- | 0.12 | -- | 10.83 | 26147 | -- | -- |
| 234.86 | 0.715 | 10.7 | -- | -- | -- | -- | -- | 0.389 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 22 | 43.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 26 | 43.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 31 | 44.22 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 81 | 46.24 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 109 | 47.19 | radiation | 1.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 120 | 47.35 | radiation | 1.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 121 | 47.36 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 125 | 47.43 | radiation | 1.0 | 270 | < th | dose independent | sin | 17 | NA |
| 127 | 47.47 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 141 | 47.70 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 172 | 48.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 173 | 48.08 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 182 | 48.19 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 193 | 48.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 200 | 48.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 207 | 48.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 232 | 49.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 236 | 49.05 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 5 |
| 239 | 49.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 240 | 49.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 242 | 49.09 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 253 | 49.20 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 391 | 50.37 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 419 | 50.60 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 17 |
| 433 | 50.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 436 | 50.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 469 | 51.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 6 |
| 471 | 51.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 493 | 51.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 496 | 51.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 502 | 51.29 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 514 | 51.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 527 | 51.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 531 | 51.60 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 547 | 51.65 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 573 | 51.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 574 | 51.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 600 | 51.95 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 602 | 51.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 604 | 51.96 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 606 | 51.96 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 607 | 51.96 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 613 | 51.96 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 614 | 51.96 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 635 | 52.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 638 | 52.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 650 | 52.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 651 | 52.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 658 | 52.19 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 659 | 52.19 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 671 | 52.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 685 | 52.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 696 | 52.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 708 | 52.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 713 | 52.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 714 | 52.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 715 | 52.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 719 | 52.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 720 | 52.43 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 725 | 52.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 7 |
| 726 | 52.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 730 | 52.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 734 | 52.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 738 | 52.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 743 | 52.61 | temperature | 20.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 760 | 52.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 768 | 52.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 774 | 52.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 788 | 52.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 810 | 52.92 | temperature | 10.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 854 | 53.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 860 | 53.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 18 |
| 861 | 53.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 18 |
| 886 | 53.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 897 | 53.35 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 899 | 53.35 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 901 | 53.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 908 | 53.38 | temperature | 25.0 | 10 | > th | dose independent | rect. | 15 | 5 |
| 911 | 53.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 944 | 53.56 | humidity | 90.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 967 | 53.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 992 | 53.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 996 | 53.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |