Os11g0242500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclin dependent kinase C.
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Os11g0242500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclin dependent kinase C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.89 | 0.308 | 10.1 | -1.26 | 0.329 | 2.54 | 1.08 | 4.97 | -0.19 | 18 | 20.11 | 279 | -- | -- |
| 47.79 | 0.322 | 10 | -1.23 | 0.286 | 0.607 | 0.614 | -- | -0.185 | 17.9 | 22.12 | 234 | -- | -- |
| 45.59 | 0.314 | 10.1 | -1.25 | 0.332 | 2.62 | -- | 4.96 | -0.186 | 18.1 | 19.89 | 276 | -- | -- |
| 48.86 | 0.326 | 10 | -1.22 | 0.301 | 0.609 | -- | -- | -0.156 | 18.1 | 22.48 | 263 | -- | -- |
| 50.94 | 0.332 | 10.1 | -1.25 | -- | 2.69 | -- | 5.18 | -0.203 | -- | 19.64 | 264 | -- | -- |
| 51.51 | 0.336 | 10 | -1.34 | 0.26 | -- | 0.694 | -- | -0.233 | 18.4 | -- | -- | -- | -- |
| 52.69 | 0.34 | 10 | -1.35 | 0.263 | -- | -- | -- | -0.231 | 18.6 | -- | -- | -- | -- |
| 53.43 | 0.34 | 10 | -1.24 | -- | 0.545 | -- | -- | -0.177 | -- | 22.05 | 253 | -- | -- |
| 83.25 | 0.425 | 10 | -- | 0.364 | 1.35 | -- | -- | 0.0206 | 18 | 21.7 | 309 | -- | -- |
| 56.29 | 0.351 | 10 | -1.36 | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
| 100.83 | 0.47 | 10 | -- | 0.281 | -- | -- | -- | -0.0806 | 18.3 | -- | -- | -- | -- |
| 64.19 | 0.373 | 9.95 | -- | -- | 1.05 | -- | -- | 0.174 | -- | 22.5 | 47520 | -- | -- |
| 104.93 | 0.478 | 10 | -- | -- | -- | -- | -- | -0.0858 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 6 | 36.60 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 13 | 36.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 20 | 37.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 49 | 38.70 | temperature | 25.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 54 | 38.75 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 60 | 38.88 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 94 | 39.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 95 | 39.43 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 166 | 40.33 | temperature | 20.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 172 | 40.38 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 196 | 40.55 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 209 | 40.67 | temperature | 20.0 | 270 | < th | dose independent | sin | 6 | NA |
| 211 | 40.67 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 258 | 40.87 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 315 | 41.26 | humidity | 90.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 333 | 41.35 | temperature | 20.0 | 270 | > th | dose independent | sin | 8 | NA |
| 343 | 41.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 363 | 41.51 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 417 | 41.78 | wind | 5.0 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 420 | 41.80 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 431 | 41.85 | wind | 5.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 448 | 41.95 | temperature | 10.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 464 | 42.04 | temperature | 20.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 497 | 42.14 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 2 |
| 507 | 42.19 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 2 |
| 521 | 42.20 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 5 |
| 571 | 42.36 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 584 | 42.39 | wind | 3.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 633 | 42.54 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 5 |
| 638 | 42.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 660 | 42.64 | wind | 3.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 670 | 42.66 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 673 | 42.66 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 681 | 42.68 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 690 | 42.70 | wind | 7.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 699 | 42.71 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 7 | 2 |
| 703 | 42.72 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 706 | 42.72 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 708 | 42.72 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 709 | 42.72 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 710 | 42.72 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 754 | 42.80 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 773 | 42.83 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 774 | 42.84 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 776 | 42.84 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 801 | 42.88 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 811 | 42.90 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 7 |
| 821 | 42.91 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 856 | 42.93 | temperature | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 929 | 43.02 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 938 | 43.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 963 | 43.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 11 |
| 973 | 43.14 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 976 | 43.14 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 978 | 43.14 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |