Os11g0240700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0240700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.17 | 0.564 | 5.1 | -0.492 | 1.14 | -1.45 | -0.581 | 12.7 | -0.406 | 19 | 1001 | 1099 | -- | -- |
| 149.05 | 0.573 | 5.18 | -0.896 | 1.14 | 0.523 | -0.564 | -- | -0.409 | 19.1 | 1001 | 1099 | -- | -- |
| 144.95 | 0.561 | 5.09 | -0.474 | 1.14 | -1.56 | -- | 13.6 | -0.405 | 19.1 | 1000 | 1102 | -- | -- |
| 145.78 | 0.562 | 5.18 | -0.9 | 1.15 | 0.933 | -- | -- | -0.398 | 19.2 | 999.5 | 1759 | -- | -- |
| 213.38 | 0.68 | 5.05 | -0.405 | -- | -1.98 | -- | 15.7 | -0.427 | -- | 1001 | 1072 | -- | -- |
| 151.68 | 0.577 | 5.18 | -0.848 | 1.14 | -- | -0.558 | -- | -0.428 | 19.1 | -- | -- | -- | -- |
| 152.47 | 0.578 | 5.18 | -0.838 | 1.14 | -- | -- | -- | -0.43 | 19.1 | -- | -- | -- | -- |
| 214.88 | 0.683 | 5.15 | -0.931 | -- | 0.833 | -- | -- | -0.417 | -- | 1000 | 1816 | -- | -- |
| 166.89 | 0.602 | 5.16 | -- | 1.15 | 0.803 | -- | -- | -0.306 | 19.1 | 998.7 | 1839 | -- | -- |
| 221.18 | 0.695 | 5.16 | -0.859 | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
| 170.97 | 0.612 | 5.16 | -- | 1.15 | -- | -- | -- | -0.337 | 19.1 | -- | -- | -- | -- |
| 237.09 | 0.717 | 5.13 | -- | -- | 0.684 | -- | -- | -0.326 | -- | 999.2 | 1902 | -- | -- |
| 240.66 | 0.724 | 5.14 | -- | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.63 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 11 |
| 5 | 138.55 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 6 |
| 7 | 138.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 10 | 138.92 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 17 | 139.15 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 15 |
| 22 | 139.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 32 | 139.78 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 12 |
| 34 | 139.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 35 | 139.86 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 38 | 139.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 65 | 140.53 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 4 | 1 |
| 72 | 140.66 | temperature | 10 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 85 | 140.77 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 11 |
| 89 | 140.81 | temperature | 25 | 30 | < th | dose independent | sin | 4 | NA |
| 143 | 141.35 | wind | 9 | 30 | < th | dose dependent | rect. | 15 | 13 |
| 152 | 141.43 | temperature | 25 | 30 | > th | dose independent | sin | 7 | NA |
| 153 | 141.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 154 | 141.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 159 | 141.45 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 181 | 141.62 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 197 | 141.72 | temperature | 15 | 90 | > th | dose independent | rect. | 4 | 21 |
| 201 | 141.73 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 4 | 1 |
| 208 | 141.77 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 12 |
| 218 | 141.80 | wind | 7 | 90 | < th | dose independent | rect. | 4 | 11 |
| 245 | 142.00 | wind | 9 | 30 | < th | dose dependent | rect. | 4 | 11 |
| 264 | 142.07 | temperature | 25 | 10 | > th | dose dependent | sin | 9 | NA |
| 274 | 142.12 | temperature | 15 | 90 | > th | dose independent | rect. | 3 | 23 |
| 282 | 142.17 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 12 |
| 291 | 142.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 330 | 142.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 11 |
| 385 | 142.55 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 10 |
| 387 | 142.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 10 |
| 406 | 142.60 | radiation | 10 | 10 | < th | dose independent | rect. | 8 | 20 |
| 424 | 142.65 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 431 | 142.68 | wind | 5 | 30 | < th | dose dependent | rect. | 1 | 3 |
| 436 | 142.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 441 | 142.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 452 | 142.73 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 23 |
| 454 | 142.74 | wind | 3 | 30 | < th | dose independent | rect. | 1 | 3 |
| 472 | 142.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 7 |
| 488 | 142.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 534 | 142.92 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 1 | 3 |
| 570 | 143.03 | temperature | 15 | 720 | > th | dose independent | rect. | 3 | 12 |
| 588 | 143.08 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 4 |
| 593 | 143.09 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 4 | 21 |
| 621 | 143.16 | temperature | 10 | 30 | > th | dose dependent | sin | 6 | NA |
| 625 | 143.18 | radiation | 1 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 725 | 143.35 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 21 |
| 726 | 143.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 738 | 143.36 | wind | 7 | 10 | < th | dose independent | rect. | 4 | 21 |
| 777 | 143.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 22 |
| 843 | 143.51 | wind | 7 | 90 | < th | dose independent | rect. | 15 | 13 |
| 854 | 143.52 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 7 | NA |
| 863 | 143.53 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 4 | 11 |
| 894 | 143.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 930 | 143.61 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 9 |