Os11g0237600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os11g0237600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.21 | 0.446 | 5.88 | 1.99 | 0.576 | 0.439 | -0.436 | -0.573 | 0.572 | 3.67 | 1011 | 9228 | -- | -- |
| 91.08 | 0.444 | 5.9 | 1.81 | 0.578 | 0.489 | -0.414 | -- | 0.531 | 3.63 | 1011 | 8509 | -- | -- |
| 90.73 | 0.444 | 5.87 | 2.01 | 0.574 | 0.432 | -- | -0.6 | 0.579 | 3.6 | 1011 | 9470 | -- | -- |
| 91.56 | 0.446 | 5.9 | 1.83 | 0.58 | 0.497 | -- | -- | 0.536 | 3.59 | 1011 | 8650 | -- | -- |
| 108.78 | 0.486 | 5.87 | 2.08 | -- | 0.407 | -- | -0.741 | 0.597 | -- | 1011 | 9495 | -- | -- |
| 100.6 | 0.47 | 5.93 | 1.61 | 0.569 | -- | -0.487 | -- | 0.387 | 3.65 | -- | -- | -- | -- |
| 101.32 | 0.471 | 5.93 | 1.62 | 0.566 | -- | -- | -- | 0.39 | 3.6 | -- | -- | -- | -- |
| 110.26 | 0.489 | 5.9 | 1.84 | -- | 0.478 | -- | -- | 0.546 | -- | 1011 | 8650 | -- | -- |
| 169.81 | 0.61 | 5.97 | -- | 0.6 | -0.0956 | -- | -- | 0.211 | 3.65 | 1010 | 16003 | -- | -- |
| 119.14 | 0.51 | 5.93 | 1.64 | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
| 170.08 | 0.61 | 5.97 | -- | 0.598 | -- | -- | -- | 0.21 | 3.58 | -- | -- | -- | -- |
| 153.33 | 0.577 | 6.02 | -- | -- | -0.961 | -- | -- | -0.0062 | -- | 1016 | 47144 | -- | -- |
| 190 | 0.643 | 5.97 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 8 | 88.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 9 | 88.42 | humidity | 90 | 43200 | < th | dose independent | sin | 6 | NA |
| 52 | 88.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 79 | 88.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 121 | 88.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 137 | 88.80 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 172 | 88.96 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 180 | 89.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 192 | 89.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 197 | 89.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 208 | 89.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 218 | 89.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 219 | 89.17 | humidity | 90 | 43200 | > th | dose independent | sin | 7 | NA |
| 227 | 89.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 231 | 89.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 280 | 89.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 287 | 89.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 327 | 89.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 349 | 89.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 357 | 89.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 385 | 89.38 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 427 | 89.46 | humidity | 80 | 43200 | > th | dose dependent | sin | 3 | NA |
| 428 | 89.47 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 434 | 89.47 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 454 | 89.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 491 | 89.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 20 |
| 526 | 89.62 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 551 | 89.66 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 563 | 89.68 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 576 | 89.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 585 | 89.70 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 664 | 89.76 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 813 | 89.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 827 | 89.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 838 | 89.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 839 | 89.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 880 | 89.95 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 881 | 89.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 886 | 89.95 | humidity | 90 | 43200 | > th | dose dependent | sin | 7 | NA |
| 896 | 89.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 897 | 89.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 955 | 90.01 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 967 | 90.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 980 | 90.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 982 | 90.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 987 | 90.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 993 | 90.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 997 | 90.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 9 |