Os11g0235300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0235300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90 | 0.446 | 6.15 | 3.02 | 0.71 | 0.469 | -0.396 | -1.42 | 2.27 | 8.09 | 68 | 787 | -- | -- |
| 92.51 | 0.448 | 6.13 | 3.1 | 0.712 | 0.433 | 0.08 | -- | 2.29 | 8.08 | 68.94 | 787 | -- | -- |
| 90.35 | 0.443 | 6.14 | 3.03 | 0.714 | 0.471 | -- | -1.16 | 2.28 | 8.14 | 68.11 | 787 | -- | -- |
| 92.54 | 0.448 | 6.13 | 3.12 | 0.707 | 0.419 | -- | -- | 2.29 | 8.06 | 69 | 787 | -- | -- |
| 107.89 | 0.484 | 6.16 | 3.07 | -- | 0.279 | -- | -0.873 | 2.25 | -- | 69.97 | 2835 | -- | -- |
| 96.21 | 0.46 | 6.14 | 3.17 | 0.514 | -- | -0.00811 | -- | 2.28 | 7.99 | -- | -- | -- | -- |
| 96.21 | 0.459 | 6.14 | 3.17 | 0.514 | -- | -- | -- | 2.28 | 7.99 | -- | -- | -- | -- |
| 108.33 | 0.485 | 6.16 | 3.1 | -- | 0.283 | -- | -- | 2.26 | -- | 68 | 12914 | -- | -- |
| 340.11 | 0.859 | 6.2 | -- | 0.796 | 0.893 | -- | -- | 1.95 | 8.32 | 68 | 1018 | -- | -- |
| 110.62 | 0.491 | 6.15 | 3.17 | -- | -- | -- | -- | 2.29 | -- | -- | -- | -- | -- |
| 360.31 | 0.888 | 6.22 | -- | 0.537 | -- | -- | -- | 1.93 | 7.57 | -- | -- | -- | -- |
| 287.73 | 0.79 | 6.46 | -- | -- | 1.14 | -- | -- | 1.19 | -- | 96 | 26321 | -- | -- |
| 375.8 | 0.905 | 6.23 | -- | -- | -- | -- | -- | 1.94 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.65 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 3 | 83.95 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 4 | 84.04 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 10 | 84.12 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 14 | 84.37 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 15 | 84.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 26 | 84.65 | wind | 1.0 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 28 | 84.72 | wind | 1.0 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 29 | 84.76 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 30 | 84.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 36 | 84.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 46 | 84.97 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 48 | 85.00 | wind | 1.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 52 | 85.03 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 55 | 85.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 95 | 85.62 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 101 | 85.66 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 123 | 85.89 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 137 | 86.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 19 |
| 144 | 86.06 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 150 | 86.08 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 155 | 86.12 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 164 | 86.22 | wind | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 168 | 86.25 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 182 | 86.35 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 184 | 86.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 188 | 86.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 198 | 86.42 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 205 | 86.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 206 | 86.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 242 | 86.68 | wind | 7.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 269 | 86.81 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 277 | 86.84 | wind | 1.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 289 | 86.93 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 294 | 86.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 321 | 87.00 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 326 | 87.01 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 337 | 87.05 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 358 | 87.08 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 371 | 87.11 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 406 | 87.19 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 444 | 87.26 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 449 | 87.27 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 471 | 87.33 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 476 | 87.34 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 477 | 87.35 | radiation | 10.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 479 | 87.36 | radiation | 40.0 | 720 | < th | dose independent | rect. | 12 | 2 |
| 539 | 87.42 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 555 | 87.47 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 556 | 87.47 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 565 | 87.50 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 568 | 87.52 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 572 | 87.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 574 | 87.53 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 575 | 87.53 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 670 | 87.73 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 677 | 87.75 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 713 | 87.81 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 715 | 87.81 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 751 | 87.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 790 | 87.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 799 | 87.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 803 | 87.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 7 |
| 826 | 87.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 15 | 19 |
| 828 | 87.99 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 851 | 88.03 | radiation | 10.0 | 14400 | > th | dose independent | no | NA | NA |
| 982 | 88.08 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 996 | 88.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |