Os11g0234100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0234100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.16 | 0.339 | 10.3 | -0.937 | 0.405 | -0.0296 | -0.966 | 1.33 | -4.27 | 6.81 | 21.36 | 585 | -- | -- |
| 57.24 | 0.352 | 10.3 | -0.61 | 0.412 | -0.104 | -0.424 | -- | -4.21 | 6.8 | 22 | 685 | -- | -- |
| 53.51 | 0.341 | 10.3 | -0.944 | 0.395 | -0.0216 | -- | 1.33 | -4.28 | 6.65 | 21 | 1901 | -- | -- |
| 55.24 | 0.346 | 10.3 | -0.856 | 0.399 | -0.415 | -- | -- | -4.25 | 6.49 | 13.56 | 26242 | -- | -- |
| 61.56 | 0.365 | 10.4 | -0.939 | -- | 0.0205 | -- | 1.41 | -4.27 | -- | 21 | 1906 | -- | -- |
| 57.48 | 0.355 | 10.3 | -0.566 | 0.4 | -- | -0.368 | -- | -4.17 | 6.57 | -- | -- | -- | -- |
| 57.82 | 0.356 | 10.3 | -0.572 | 0.399 | -- | -- | -- | -4.17 | 6.55 | -- | -- | -- | -- |
| 63.57 | 0.371 | 10.3 | -0.823 | -- | -0.39 | -- | -- | -4.24 | -- | 13.65 | 26238 | -- | -- |
| 59.98 | 0.361 | 10.2 | -- | 0.321 | 0.321 | -- | -- | -4.02 | 7.21 | 23.92 | 47520 | -- | -- |
| 66.1 | 0.38 | 10.3 | -0.562 | -- | -- | -- | -- | -4.16 | -- | -- | -- | -- | -- |
| 66.44 | 0.381 | 10.3 | -- | 0.392 | -- | -- | -- | -4.11 | 6.63 | -- | -- | -- | -- |
| 65.96 | 0.378 | 10.3 | -- | -- | 0.421 | -- | -- | -3.93 | -- | 26.47 | 47520 | -- | -- |
| 74.44 | 0.403 | 10.3 | -- | -- | -- | -- | -- | -4.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.00 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 50.72 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 4 | 50.79 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 6 | 51.09 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 7 | 51.32 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 13 | 51.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 22 | 51.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 23 | 51.94 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 24 | 51.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 36 | 52.15 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 40 | 52.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 41 | 52.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 53 | 52.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 59 | 52.26 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 64 | 52.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 77 | 52.35 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 80 | 52.36 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 11 |
| 88 | 52.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 98 | 52.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 103 | 52.43 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 104 | 52.43 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 20 |
| 105 | 52.43 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 21 |
| 111 | 52.43 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 19 |
| 117 | 52.44 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 14 |
| 123 | 52.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 135 | 52.46 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 10 |
| 143 | 52.47 | radiation | 1 | 4320 | < th | dose dependent | sin | 4 | NA |
| 145 | 52.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 154 | 52.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 194 | 52.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 224 | 52.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 276 | 52.60 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 335 | 52.67 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 362 | 52.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 389 | 52.73 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 424 | 52.76 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 20 |
| 467 | 52.80 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 10 |
| 480 | 52.81 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 10 |
| 509 | 52.83 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 23 |
| 554 | 52.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 555 | 52.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 556 | 52.86 | radiation | 1 | 4320 | < th | dose independent | sin | 4 | NA |
| 558 | 52.86 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 567 | 52.86 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 583 | 52.87 | temperature | 20 | 14400 | > th | dose independent | sin | 4 | NA |
| 585 | 52.87 | radiation | 1 | 4320 | > th | dose independent | sin | 4 | NA |
| 590 | 52.87 | temperature | 20 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 603 | 52.87 | temperature | 20 | 14400 | > th | dose independent | rect. | 1 | 20 |
| 610 | 52.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 611 | 52.88 | humidity | 90 | 10 | > th | dose independent | rect. | 2 | 4 |
| 612 | 52.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 613 | 52.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 620 | 52.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 625 | 52.88 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 19 |
| 633 | 52.88 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 22 |
| 637 | 52.88 | temperature | 25 | 14400 | < th | dose dependent | rect. | 2 | 11 |
| 644 | 52.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 660 | 52.89 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 672 | 52.89 | temperature | 25 | 14400 | < th | dose dependent | sin | 5 | NA |
| 673 | 52.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 687 | 52.89 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 709 | 52.90 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 768 | 52.90 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 23 |
| 775 | 52.91 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 780 | 52.91 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 794 | 52.91 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 818 | 52.91 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 841 | 52.91 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 19 |
| 859 | 52.92 | temperature | 20 | 14400 | < th | dose independent | sin | 4 | NA |
| 867 | 52.92 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 881 | 52.92 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 913 | 52.92 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 917 | 52.92 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 918 | 52.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 935 | 52.92 | temperature | 25 | 14400 | < th | dose dependent | rect. | 15 | 18 |
| 963 | 52.92 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 974 | 52.93 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |