FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0233900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0386) R2 : 0.489
β1 : -2.59 (0.173) R2dD : 0.446 R2D : -0.0827
β2 : 0.92 (0.092) R2dC : 0.127 R2C : 0.0649
β3 : -0.64 (0.181) R2dE : 0.0234 R2E : -0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.01 (0.572) R2dD*E : 0.127 R2D*E : -0.213
γ1 : -1.02 (0.0875) R2dN8 : 0.278 R2N8 : -0.00273
σ : 0.67
deviance : 207.13
__
_____
C
peak time of C : 21.4
E
wheather : temperature
threshold : 25.3
memory length : 659
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.23 0.658 3.84 -2.56 0.924 -0.726 -1.84 3.53 -1.03 21.5 24.9 611 -- --
208.97 0.673 3.75 -2.04 0.925 -1.43 -2.49 -- -0.854 21.5 21.63 556 -- --
207.13 0.67 3.84 -2.59 0.92 -0.64 -- 4.01 -1.02 21.4 25.3 659 -- --
232.64 0.71 3.75 -1.89 0.953 -1.6 -- -- -0.812 21.3 20 753 -- --
250.42 0.737 3.83 -2.69 -- -1.26 -- 3.78 -1.12 -- 26.7 688 -- --
227.44 0.707 3.72 -1.69 1.03 -- -2.64 -- -0.696 21.4 -- -- -- --
252.84 0.745 3.72 -1.6 1.04 -- -- -- -0.692 21.4 -- -- -- --
277.79 0.776 3.77 -2.02 -- -1.52 -- -- -1.03 -- 26.42 669 -- --
318.23 0.831 3.68 -- 1.03 -0.617 -- -- -0.523 21.2 18.44 591 -- --
316.62 0.831 3.69 -1.59 -- -- -- -- -0.696 -- -- -- -- --
319.96 0.837 3.68 -- 1.04 -- -- -- -0.515 21.3 -- -- -- --
373.22 0.9 3.68 -- -- -0.731 -- -- -0.659 -- 26.6 639 -- --
383.31 0.914 3.65 -- -- -- -- -- -0.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.76 temperature 15.0 720 > th dose dependent rect. 15 16
2 193.78 temperature 25.0 720 < th dose dependent rect. 13 18
9 194.15 temperature 15.0 270 > th dose dependent sin 9 NA
19 194.44 atmosphere 1015.0 720 < th dose dependent rect. 10 8
23 194.67 humidity 90.0 14400 > th dose dependent rect. 24 2
25 194.75 humidity 90.0 14400 > th dose dependent rect. 4 2
33 194.96 wind 7.0 4320 > th dose dependent rect. 9 1
42 195.30 humidity 90.0 14400 > th dose dependent rect. 23 7
53 195.45 temperature 25.0 720 < th dose dependent sin 13 NA
54 195.45 humidity 90.0 14400 > th dose dependent rect. 3 4
63 195.63 temperature 15.0 720 > th dose dependent sin 13 NA
70 195.78 humidity 90.0 14400 > th dose independent rect. 23 5
78 195.83 temperature 15.0 720 > th dose dependent rect. 19 8
83 195.92 humidity 90.0 14400 > th dose independent rect. 22 8
84 195.93 radiation 1.0 14400 < th dose independent rect. 18 4
88 195.94 radiation 1.0 14400 < th dose independent rect. 18 8
90 195.95 radiation 1.0 14400 < th dose independent rect. 18 2
118 196.33 radiation 1.0 14400 < th dose dependent rect. 4 1
141 196.64 temperature 15.0 720 > th dose dependent rect. 21 6
143 196.65 radiation 40.0 43200 < th dose independent rect. 16 15
157 196.78 atmosphere 995.0 720 > th dose dependent rect. 9 10
158 196.78 temperature 25.0 720 < th dose dependent rect. 18 23
159 196.79 temperature 25.0 720 < th dose dependent no NA NA
161 196.80 temperature 25.0 720 < th dose dependent rect. 3 23
162 196.82 atmosphere 1005.0 720 < th dose independent rect. 13 4
166 196.89 wind 9.0 43200 > th dose dependent rect. 18 1
168 196.90 radiation 1.0 4320 < th dose dependent rect. 18 4
170 196.90 radiation 1.0 4320 < th dose dependent rect. 18 8
175 196.93 temperature 25.0 720 < th dose dependent rect. 1 23
177 196.94 radiation 1.0 4320 < th dose dependent rect. 18 2
194 197.06 wind 1.0 43200 < th dose independent rect. 2 4
230 197.27 radiation 1.0 14400 < th dose dependent rect. 21 8
232 197.28 atmosphere 1005.0 720 > th dose independent rect. 14 1
234 197.29 atmosphere 1005.0 270 > th dose dependent rect. 13 8
252 197.42 radiation 1.0 4320 > th dose independent rect. 18 1
267 197.48 atmosphere 1005.0 720 < th dose independent rect. 10 9
275 197.57 atmosphere 1005.0 720 > th dose independent rect. 13 4
276 197.57 atmosphere 1005.0 720 < th dose independent rect. 11 6
283 197.62 radiation 40.0 43200 < th dose independent rect. 16 4
286 197.65 wind 1.0 43200 < th dose independent rect. 5 1
287 197.65 atmosphere 1005.0 720 > th dose independent rect. 11 8
301 197.73 atmosphere 995.0 720 > th dose dependent rect. 11 8
304 197.74 wind 1.0 43200 < th dose dependent rect. 19 1
309 197.77 radiation 40.0 43200 < th dose independent rect. 16 6
311 197.77 humidity 50.0 14400 > th dose dependent rect. 1 1
338 197.95 atmosphere 1005.0 720 > th dose dependent rect. 11 4
349 198.01 radiation 40.0 43200 < th dose independent rect. 16 2
354 198.05 radiation 40.0 43200 < th dose independent rect. 16 10
361 198.08 atmosphere 1005.0 720 > th dose dependent rect. 10 7
362 198.10 radiation 20.0 14400 > th dose independent rect. 6 1
380 198.13 wind 1.0 43200 > th dose independent rect. 2 4
411 198.27 wind 1.0 43200 > th dose independent rect. 5 1
423 198.33 wind 9.0 43200 < th dose independent rect. 18 1
433 198.38 wind 9.0 43200 > th dose independent rect. 18 1
453 198.48 humidity 90.0 14400 < th dose independent rect. 23 3
457 198.49 temperature 15.0 720 > th dose dependent rect. 19 12
463 198.52 radiation 1.0 43200 < th dose independent rect. 4 1
487 198.62 temperature 10.0 720 > th dose dependent rect. 15 22
516 198.77 radiation 1.0 43200 < th dose independent rect. 1 4
518 198.78 humidity 90.0 14400 < th dose independent rect. 22 6
561 199.04 atmosphere 1000.0 720 > th dose dependent rect. 13 2
576 199.11 atmosphere 995.0 720 > th dose dependent rect. 13 6
579 199.12 humidity 60.0 43200 < th dose independent rect. 10 1
607 199.23 radiation 1.0 43200 < th dose independent rect. 21 8
622 199.29 radiation 30.0 43200 < th dose independent rect. 4 3
634 199.34 wind 1.0 43200 < th dose independent rect. 19 1
635 199.34 radiation 1.0 43200 > th dose independent rect. 4 1
648 199.34 radiation 1.0 43200 > th dose dependent rect. 4 1
649 199.34 atmosphere 1010.0 720 < th dose dependent rect. 15 2
677 199.42 humidity 90.0 14400 < th dose independent rect. 22 8
680 199.43 wind 9.0 4320 > th dose dependent rect. 11 1
712 199.52 radiation 10.0 14400 < th dose independent rect. 10 2
717 199.54 temperature 20.0 720 > th dose dependent rect. 1 1
732 199.60 radiation 30.0 43200 < th dose independent rect. 1 6
743 199.62 wind 1.0 43200 < th dose dependent rect. 5 1
799 199.88 radiation 30.0 43200 < th dose independent rect. 19 12
814 199.92 radiation 10.0 14400 < th dose independent rect. 10 4
828 199.96 humidity 90.0 14400 > th dose dependent sin 9 NA
850 200.05 humidity 60.0 43200 < th dose independent rect. 9 3
867 200.09 temperature 15.0 270 > th dose dependent rect. 21 12
887 200.16 radiation 30.0 43200 < th dose independent rect. 21 10
909 200.23 humidity 90.0 4320 > th dose dependent rect. 23 17
913 200.24 radiation 40.0 4320 < th dose independent rect. 22 11
919 200.25 radiation 20.0 14400 > th dose dependent rect. 6 2
936 200.26 radiation 40.0 4320 < th dose independent rect. 7 2
937 200.27 precipitation 0.1 43200 > th dose independent rect. 14 1
938 200.27 precipitation 0.1 43200 > th dose dependent rect. 14 1
953 200.29 radiation 40.0 4320 < th dose independent rect. 20 13
979 200.34 radiation 1.0 4320 < th dose dependent rect. 18 19
981 200.35 radiation 40.0 4320 < th dose independent rect. 2 7
986 200.36 radiation 40.0 4320 < th dose independent rect. 18 15
1000 200.39 radiation 40.0 43200 < th dose dependent rect. 4 1