Os11g0232100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0232100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.88 | 0.433 | 10.2 | -0.182 | 2.07 | -0.615 | -0.225 | -0.658 | -0.495 | 8.79 | 71.24 | 1258 | -- | -- |
| 85.8 | 0.431 | 10.2 | -0.265 | 2.05 | -0.658 | -0.314 | -- | -0.521 | 8.79 | 72 | 1262 | -- | -- |
| 85.05 | 0.43 | 10.2 | -0.184 | 2.08 | -0.617 | -- | -0.704 | -0.493 | 8.8 | 71.43 | 1249 | -- | -- |
| 86.06 | 0.432 | 10.2 | -0.289 | 2.07 | -0.652 | -- | -- | -0.523 | 8.82 | 71.99 | 1257 | -- | -- |
| 313.55 | 0.825 | 10.3 | -0.232 | -- | -0.675 | -- | -0.359 | -0.498 | -- | 72 | 1465 | -- | -- |
| 100.87 | 0.471 | 10.2 | -0.15 | 2.02 | -- | -0.401 | -- | -0.431 | 8.56 | -- | -- | -- | -- |
| 101.39 | 0.472 | 10.2 | -0.162 | 2.02 | -- | -- | -- | -0.431 | 8.56 | -- | -- | -- | -- |
| 313.91 | 0.825 | 10.3 | -0.257 | -- | -0.68 | -- | -- | -0.504 | -- | 71.99 | 1460 | -- | -- |
| 88.28 | 0.438 | 10.2 | -- | 2.07 | -0.615 | -- | -- | -0.49 | 8.79 | 71.14 | 1260 | -- | -- |
| 331.3 | 0.851 | 10.3 | -0.155 | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
| 102.08 | 0.473 | 10.2 | -- | 2.02 | -- | -- | -- | -0.413 | 8.57 | -- | -- | -- | -- |
| 316.04 | 0.828 | 10.3 | -- | -- | -0.669 | -- | -- | -0.475 | -- | 72 | 1460 | -- | -- |
| 331.93 | 0.85 | 10.3 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 2 | 78.73 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 12 |
| 15 | 80.06 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 29 | 81.15 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 11 |
| 33 | 81.45 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 37 | 81.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 38 | 81.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 45 | 82.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 50 | 82.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 63 | 82.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 70 | 83.27 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 76 | 83.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 87 | 83.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 90 | 83.58 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 93 | 83.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 94 | 83.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 98 | 83.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 105 | 83.75 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 17 |
| 111 | 83.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 117 | 83.88 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 18 |
| 119 | 83.92 | temperature | 25 | 270 | < th | dose independent | sin | 12 | NA |
| 130 | 84.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 133 | 84.09 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 19 |
| 145 | 84.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 190 | 84.54 | humidity | 70 | 1440 | > th | dose independent | sin | 12 | NA |
| 191 | 84.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 194 | 84.56 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 16 |
| 205 | 84.67 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 219 | 84.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 235 | 85.00 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 239 | 85.01 | humidity | 80 | 1440 | < th | dose dependent | sin | 11 | NA |
| 243 | 85.03 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 277 | 85.27 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 292 | 85.38 | humidity | 80 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 316 | 85.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 324 | 85.61 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 340 | 85.66 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 342 | 85.68 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 1 |
| 396 | 85.85 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 21 |
| 413 | 85.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 452 | 86.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 489 | 86.16 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 537 | 86.28 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 547 | 86.29 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 554 | 86.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 555 | 86.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 561 | 86.32 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 562 | 86.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 680 | 86.41 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 722 | 86.51 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 16 |
| 749 | 86.55 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 753 | 86.56 | humidity | 70 | 1440 | < th | dose independent | sin | 17 | NA |
| 763 | 86.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 779 | 86.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 817 | 86.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 834 | 86.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 849 | 86.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 855 | 86.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 15 |
| 917 | 86.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 929 | 86.74 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 941 | 86.75 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 956 | 86.77 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 11 |