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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0231400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.019) R2 : 0.00493
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0603 (0.0401) R2dN8 : 0.00637 R2N8 : 0.00493
σ : 0.359
deviance : 59.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.74 0.344 3.3 0.229 0.179 1.1 -0.258 5.32 -0.0706 6.24 7.374 757 -- --
56.68 0.353 3.25 0.136 0.173 -0.0149 -0.36 -- -0.0505 5.97 7.374 757 -- --
53.87 0.342 3.3 0.234 0.183 1.16 -- 5.65 -0.0702 6.65 7.4 750 -- --
56.88 0.351 3.26 0.118 0.173 -0.108 -- -- -0.0524 5.96 8.8 1012 -- --
55.46 0.347 3.31 0.216 -- 1.1 -- 5.72 -0.0678 -- 7.457 756 -- --
56.68 0.353 3.25 0.138 0.174 -- -0.364 -- -0.0501 5.95 -- -- -- --
57 0.354 3.25 0.135 0.173 -- -- -- -0.0486 6.14 -- -- -- --
56.91 0.351 3.23 0.185 -- -0.208 -- -- 0.0577 -- 11.3 4740 -- --
56.2 0.349 3.25 -- 0.15 -0.169 -- -- -0.0745 6.74 9.139 4638 -- --
58.54 0.358 3.26 0.14 -- -- -- -- -0.0448 -- -- -- -- --
57.48 0.355 3.26 -- 0.175 -- -- -- -0.0636 6.1 -- -- -- --
57.14 0.352 3.25 -- -- -0.267 -- -- -0.00206 -- 8.841 4998 -- --
59.06 0.359 3.26 -- -- -- -- -- -0.0603 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.30 atmosphere 1005 30 > th dose dependent rect. 2 3
3 52.38 humidity 80 14400 < th dose dependent rect. 1 8
6 52.53 atmosphere 1000 30 > th dose independent rect. 3 23
8 52.61 temperature 25 270 > th dose independent rect. 2 1
12 52.67 wind 9 720 > th dose dependent rect. 12 6
14 52.68 temperature 25 270 > th dose dependent rect. 2 1
15 52.72 temperature 25 270 > th dose dependent rect. 1 3
20 52.75 wind 9 720 > th dose dependent rect. 12 10
35 52.77 wind 9 720 > th dose dependent rect. 12 8
60 52.86 wind 9 720 > th dose independent rect. 12 6
84 52.89 atmosphere 1000 90 < th dose independent rect. 23 3
86 52.90 wind 7 720 > th dose dependent sin 15 NA
87 52.91 atmosphere 1000 10 < th dose independent rect. 17 10
112 52.97 humidity 90 10 < th dose independent rect. 4 1
118 52.99 wind 9 720 > th dose independent rect. 12 11
136 53.03 atmosphere 1000 10 < th dose independent rect. 22 5
145 53.04 atmosphere 1000 270 < th dose independent rect. 22 1
166 53.07 wind 7 720 < th dose independent rect. 13 16
179 53.10 wind 7 1440 < th dose independent rect. 13 4
212 53.14 wind 9 720 < th dose independent sin 13 NA
220 53.16 wind 3 14400 > th dose independent rect. 10 1
224 53.16 atmosphere 1005 10 > th dose dependent rect. 4 1
256 53.20 wind 1 30 > th dose independent rect. 4 1
294 53.27 atmosphere 1000 10 < th dose dependent rect. 17 9
335 53.32 wind 9 720 > th dose independent sin 15 NA
365 53.36 wind 7 720 < th dose independent rect. 15 15
367 53.37 wind 3 14400 < th dose independent rect. 10 1
375 53.38 atmosphere 1000 10 < th dose independent sin 11 NA
385 53.38 wind 7 720 < th dose independent rect. 3 17
420 53.41 wind 5 14400 < th dose dependent rect. 10 2
437 53.43 atmosphere 1000 10 > th dose independent rect. 11 23
454 53.44 wind 1 30 < th dose independent rect. 23 4
484 53.47 atmosphere 1000 90 < th dose independent rect. 17 16
538 53.53 atmosphere 1000 10 < th dose independent rect. 7 20
581 53.56 atmosphere 1000 10 < th dose dependent rect. 23 3
640 53.59 atmosphere 1000 90 < th dose independent rect. 21 12
667 53.60 atmosphere 1000 270 < th dose independent rect. 17 14
697 53.61 temperature 20 90 > th dose dependent rect. 4 1
712 53.62 humidity 50 1440 > th dose independent rect. 17 10
741 53.64 humidity 60 1440 > th dose independent rect. 18 7
746 53.64 humidity 50 1440 > th dose independent rect. 17 17
764 53.65 atmosphere 1000 270 < th dose dependent rect. 22 1
768 53.66 humidity 60 1440 < th dose independent rect. 18 1
769 53.66 humidity 60 1440 > th dose independent rect. 18 2
782 53.66 humidity 60 1440 < th dose dependent rect. 18 1
787 53.66 humidity 50 1440 < th dose dependent rect. 16 19
812 53.67 wind 7 720 < th dose independent rect. 17 12
839 53.68 humidity 70 14400 > th dose independent rect. 8 1
849 53.68 humidity 50 1440 < th dose independent rect. 16 19
858 53.69 atmosphere 1000 270 < th dose dependent rect. 17 6
874 53.70 atmosphere 1000 90 > th dose independent rect. 9 23
875 53.70 wind 1 30 > th dose dependent rect. 4 1
886 53.71 humidity 60 1440 < th dose dependent rect. 17 16
888 53.72 temperature 25 10 > th dose independent rect. 4 1
894 53.72 humidity 50 1440 < th dose independent rect. 17 17
939 53.75 atmosphere 1000 30 > th dose independent rect. 21 23
975 53.77 atmosphere 1000 30 > th dose independent sin 13 NA
978 53.77 wind 9 720 > th dose independent rect. 17 9