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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0229600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.3 (0.0345) R2 : 0.826
β1 : -1.07 (0.126) R2dD : 0.0284 R2D : -0.268
β2 : 1.43 (0.0845) R2dC : 0.109 R2C : -0.106
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.18 (0.0735) R2dN8 : 0.959 R2N8 : 0.689
σ : 0.647
deviance : 191.08
__
_____
C
peak time of C : 21.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.7 0.614 7.29 -0.702 1.36 -0.368 -0.162 -1.63 -3.23 22 24.58 264 -- --
177.97 0.621 7.32 -1.18 1.38 -0.556 -0.442 -- -3.3 21.5 21.3 464 -- --
170.75 0.609 7.29 -0.698 1.37 -0.368 -- -1.6 -3.24 22 24.6 243 -- --
177.16 0.62 7.33 -1.26 1.36 -0.584 -- -- -3.34 21.6 21.2 427 -- --
256.13 0.745 7.23 -0.776 -- -0.874 -- -1.95 -3.31 -- 25 716 -- --
191.01 0.648 7.3 -1.07 1.42 -- -0.135 -- -3.18 21.4 -- -- -- --
191.08 0.647 7.3 -1.07 1.43 -- -- -- -3.18 21.4 -- -- -- --
254.56 0.743 7.35 -1.41 -- -1.09 -- -- -3.61 -- 24.72 719 -- --
216 0.685 7.29 -- 1.4 -0.299 -- -- -3.15 21.5 22.3 417 -- --
310.27 0.823 7.26 -1.06 -- -- -- -- -3.19 -- -- -- -- --
221.07 0.696 7.27 -- 1.43 -- -- -- -3.06 21.4 -- -- -- --
303 0.811 7.3 -- -- -0.858 -- -- -3.36 -- 25.1 713 -- --
339.81 0.86 7.23 -- -- -- -- -- -3.07 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.73 temperature 20 270 > th dose dependent rect. 21 15
4 164.99 temperature 15 10 > th dose dependent rect. 6 23
8 165.47 temperature 20 270 > th dose dependent rect. 19 18
19 166.16 atmosphere 1015 10 < th dose dependent rect. 8 21
25 166.59 atmosphere 1015 10 < th dose dependent rect. 10 19
29 166.80 atmosphere 1015 90 < th dose dependent rect. 9 19
30 166.81 temperature 30 270 < th dose dependent rect. 1 8
34 167.00 temperature 15 10 > th dose dependent rect. 8 21
46 167.47 temperature 25 270 < th dose independent rect. 1 9
51 167.61 temperature 30 270 < th dose dependent sin 8 NA
67 168.00 temperature 20 270 > th dose dependent sin 7 NA
84 168.36 temperature 25 90 < th dose independent rect. 4 7
96 168.53 temperature 30 270 < th dose dependent rect. 23 10
106 168.67 temperature 25 270 < th dose independent rect. 1 14
107 168.68 temperature 25 270 > th dose independent rect. 23 14
118 168.82 temperature 25 270 < th dose independent sin 6 NA
136 169.05 temperature 15 90 > th dose dependent sin 4 NA
169 169.44 temperature 25 270 > th dose independent rect. 16 21
178 169.51 temperature 25 270 < th dose independent rect. 1 20
179 169.55 temperature 25 270 > th dose independent sin 6 NA
182 169.58 atmosphere 1000 270 > th dose dependent rect. 13 8
186 169.60 temperature 25 270 < th dose dependent rect. 1 21
189 169.64 temperature 25 720 > th dose dependent rect. 9 1
224 169.94 temperature 30 270 < th dose dependent rect. 1 16
227 169.95 temperature 30 270 < th dose dependent rect. 1 14
259 170.13 temperature 15 10 > th dose dependent rect. 8 23
265 170.17 temperature 20 10 > th dose dependent rect. 19 21
280 170.23 atmosphere 1015 10 < th dose dependent rect. 19 10
296 170.31 temperature 20 10 > th dose dependent rect. 21 19
326 170.51 temperature 25 30 < th dose independent rect. 4 10
329 170.52 temperature 30 720 > th dose independent rect. 13 1
365 170.73 temperature 25 720 > th dose dependent rect. 6 9
381 170.79 temperature 30 720 > th dose independent rect. 10 4
399 170.82 temperature 10 30 > th dose dependent rect. 21 23
402 170.84 temperature 30 720 > th dose independent rect. 8 6
471 171.05 temperature 25 720 > th dose dependent rect. 9 3
497 171.14 temperature 20 270 > th dose independent rect. 6 22
655 171.68 wind 3 1440 > th dose dependent rect. 8 1
708 171.85 temperature 20 10 > th dose independent rect. 21 8
711 171.85 temperature 30 90 < th dose dependent rect. 4 13
733 171.91 temperature 25 4320 < th dose independent rect. 1 2
745 171.95 atmosphere 1005 10 > th dose dependent rect. 14 9
747 171.95 atmosphere 1015 10 < th dose dependent rect. 6 23
829 172.20 temperature 30 10 < th dose dependent rect. 5 14
873 172.31 temperature 25 270 < th dose dependent rect. 11 23
880 172.34 temperature 25 270 < th dose dependent no NA NA
883 172.36 atmosphere 1010 10 < th dose independent rect. 5 3
904 172.39 temperature 30 30 < th dose dependent rect. 7 23
917 172.42 temperature 25 270 < th dose dependent rect. 15 23
922 172.44 temperature 25 270 < th dose dependent rect. 17 23
923 172.45 temperature 25 270 < th dose independent rect. 8 23
938 172.48 temperature 30 90 < th dose dependent rect. 13 22
942 172.49 temperature 25 4320 > th dose independent rect. 24 1
947 172.50 temperature 30 10 < th dose dependent rect. 5 6
981 172.59 temperature 25 270 < th dose independent no NA NA
990 172.60 temperature 25 270 < th dose dependent rect. 9 23