FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0229500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0525) R2 : 0.923
β1 : 2.64 (0.195) R2dD : 0.0328 R2D : -0.154
β2 : 1.78 (0.128) R2dC : 0.0337 R2C : -0.218
β3 : -1.84 (0.204) R2dE : 0.0148 R2E : -0.26
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -7.67 (0.112) R2dN8 : 1.06 R2N8 : 0.856
σ : 0.982
deviance : 444.39
__
_____
C
peak time of C : 1.56
E
wheather : humidity
threshold : 82.55
memory length : 1336
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
441.24 0.987 11.4 2.68 1.66 -1.83 -0.857 0.824 -7.68 1.63 81.63 1419 -- --
441.62 0.979 11.5 2.63 1.77 -1.82 -0.799 -- -7.68 1.61 82.09 1336 -- --
444.1 0.982 11.4 2.71 1.66 -1.85 -- 0.78 -7.67 1.58 81.95 1420 -- --
444.39 0.982 11.5 2.64 1.78 -1.84 -- -- -7.67 1.56 82.55 1336 -- --
526.35 1.07 11.4 2.4 -- -2.46 -- 1.17 -7.56 -- 136.1 8 -- --
519.11 1.07 11.4 2.31 1.58 -- -1.18 -- -7.63 1.57 -- -- -- --
524.61 1.07 11.4 2.35 1.58 -- -- -- -7.62 1.48 -- -- -- --
528.7 1.08 11.4 2.39 -- -2.41 -- -- -7.57 -- 136.1 8 -- --
615.53 1.16 11.5 -- 1.86 -1.63 -- -- -7.84 1.58 133.5 1274 -- --
676.79 1.22 11.4 2.42 -- -- -- -- -7.59 -- -- -- -- --
670.58 1.21 11.5 -- 1.62 -- -- -- -7.88 1.53 -- -- -- --
677.81 1.21 11.5 -- -- -2.41 -- -- -7.83 -- 183.3 2 -- --
830.78 1.35 11.5 -- -- -- -- -- -7.85 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 439.97 humidity 80 1440 < th dose dependent rect. 12 22
2 440.10 humidity 60 1440 > th dose independent rect. 15 2
7 440.64 humidity 80 1440 < th dose dependent rect. 19 22
14 440.95 humidity 90 1440 < th dose dependent rect. 13 1
20 441.29 humidity 80 1440 < th dose dependent rect. 12 5
22 441.45 humidity 80 1440 < th dose dependent rect. 6 20
24 441.45 humidity 80 1440 < th dose dependent rect. 24 22
25 441.46 humidity 80 1440 < th dose dependent rect. 6 16
50 441.52 humidity 80 1440 < th dose dependent no NA NA
60 441.55 humidity 80 1440 < th dose dependent rect. 11 15
69 441.60 humidity 80 1440 < th dose dependent sin 21 NA
71 441.60 humidity 80 1440 < th dose dependent rect. 11 11
89 441.76 humidity 60 1440 < th dose independent rect. 14 3
121 442.11 humidity 80 1440 < th dose dependent rect. 23 19
129 442.17 humidity 80 1440 < th dose dependent rect. 6 12
158 442.34 humidity 80 1440 < th dose dependent rect. 15 23
213 442.82 humidity 50 1440 > th dose dependent rect. 13 1
226 443.04 humidity 60 1440 > th dose independent rect. 14 20
280 444.18 humidity 50 1440 > th dose dependent rect. 12 5
324 444.73 humidity 60 1440 < th dose independent rect. 14 20
371 445.41 humidity 60 1440 > th dose independent rect. 14 7
375 445.45 humidity 60 1440 > th dose independent rect. 14 9
391 445.54 humidity 60 1440 > th dose independent rect. 14 15
410 445.82 humidity 50 1440 > th dose dependent rect. 11 11
754 447.45 humidity 50 720 > th dose dependent rect. 15 9
776 447.64 humidity 50 1440 > th dose dependent sin 20 NA
914 448.61 humidity 50 1440 > th dose dependent rect. 15 1
920 448.67 humidity 70 1440 > th dose independent rect. 17 22
972 449.33 humidity 70 1440 < th dose independent rect. 17 22