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Os11g0229400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0278) R2 : 0.458
β1 : 1.24 (0.101) R2dD : 0.184 R2D : 0.197
β2 : 0.63 (0.0689) R2dC : 0.1 R2C : 0.0677
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.575 (0.0591) R2dN8 : 0.15 R2N8 : 0.173
σ : 0.521
deviance : 123.78
__
_____
C
peak time of C : 20.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.84 0.499 9.42 1.42 0.594 0.713 0.269 1.08 -0.581 22.4 5.013 93 -- --
115.12 0.5 9.41 1.42 0.618 0.61 0.342 -- -0.554 22 5.001 101 -- --
113.08 0.495 9.42 1.42 0.591 0.727 -- 1.06 -0.586 22.4 5 101 -- --
114.36 0.498 9.39 1.38 0.599 0.581 -- -- -0.564 22.6 4.795 98 -- --
130.01 0.531 9.4 1.5 -- 0.827 -- 0.763 -0.564 -- 4.603 554 -- --
122.9 0.52 9.4 1.26 0.633 -- 0.515 -- -0.574 20.9 -- -- -- --
123.78 0.521 9.4 1.24 0.63 -- -- -- -0.575 20.9 -- -- -- --
130.43 0.532 9.39 1.45 -- 0.868 -- -- -0.574 -- 4.8 563 -- --
162.18 0.593 9.43 -- 0.612 0.26 -- -- -0.718 21.8 4.729 90 -- --
146.5 0.566 9.38 1.24 -- -- -- -- -0.579 -- -- -- -- --
164.35 0.6 9.43 -- 0.628 -- -- -- -0.713 21.1 -- -- -- --
182.49 0.629 9.42 -- -- 0.333 -- -- -0.727 -- 4.003 359 -- --
187.12 0.638 9.41 -- -- -- -- -- -0.717 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.80 wind 9.0 4320 > th dose independent rect. 17 4
2 108.18 wind 9.0 4320 > th dose independent rect. 17 1
3 108.35 radiation 10.0 4320 < th dose dependent rect. 19 10
5 108.52 radiation 40.0 14400 < th dose dependent rect. 19 10
6 108.55 wind 9.0 4320 < th dose independent rect. 17 4
8 108.68 wind 7.0 4320 > th dose dependent rect. 17 4
9 108.73 humidity 90.0 14400 < th dose independent rect. 6 1
10 108.76 wind 7.0 4320 > th dose dependent rect. 17 2
14 108.91 wind 5.0 90 > th dose independent rect. 12 21
16 109.02 wind 9.0 4320 < th dose independent rect. 17 1
18 109.21 wind 7.0 4320 > th dose dependent rect. 15 6
27 109.50 humidity 90.0 14400 > th dose independent rect. 6 1
28 109.50 wind 7.0 4320 > th dose independent rect. 15 6
29 109.54 radiation 1.0 1440 > th dose independent rect. 10 3
32 109.60 wind 7.0 4320 < th dose independent rect. 15 6
39 109.77 wind 5.0 90 < th dose independent rect. 7 22
42 109.85 wind 9.0 43200 > th dose independent rect. 16 4
50 110.09 radiation 1.0 4320 < th dose independent rect. 19 10
54 110.13 temperature 25.0 90 < th dose independent rect. 13 18
56 110.15 radiation 10.0 4320 < th dose dependent rect. 21 8
72 110.42 temperature 20.0 1440 > th dose independent rect. 6 1
87 110.53 wind 9.0 14400 > th dose independent rect. 23 2
88 110.55 wind 9.0 14400 > th dose dependent rect. 23 2
97 110.60 wind 3.0 90 > th dose dependent rect. 12 20
101 110.65 precipitation 0.1 4320 < th dose independent rect. 6 1
102 110.65 precipitation 0.1 4320 < th dose dependent rect. 6 1
111 110.70 wind 7.0 43200 > th dose dependent rect. 17 3
131 110.83 radiation 20.0 1440 < th dose dependent rect. 11 1
150 110.97 radiation 10.0 30 < th dose dependent rect. 5 13
154 111.01 temperature 20.0 1440 < th dose independent rect. 6 1
158 111.02 radiation 30.0 14400 < th dose dependent rect. 21 8
168 111.06 temperature 20.0 1440 > th dose independent rect. 22 1
175 111.09 wind 5.0 90 > th dose independent sin 15 NA
192 111.17 wind 5.0 90 < th dose independent rect. 8 17
199 111.20 temperature 25.0 90 < th dose independent rect. 13 8
200 111.21 wind 9.0 4320 < th dose independent rect. 17 8
209 111.24 humidity 50.0 10 > th dose dependent rect. 12 20
216 111.27 temperature 25.0 10 < th dose independent rect. 13 7
219 111.27 wind 5.0 90 > th dose dependent sin 13 NA
220 111.27 humidity 90.0 14400 > th dose dependent rect. 6 1
227 111.29 precipitation 0.1 90 > th dose independent rect. 3 16
232 111.31 temperature 20.0 1440 < th dose independent rect. 22 1
256 111.38 radiation 10.0 1440 < th dose dependent rect. 9 5
277 111.45 humidity 90.0 14400 > th dose dependent rect. 4 11
278 111.46 temperature 25.0 270 < th dose independent rect. 17 1
280 111.47 temperature 25.0 90 < th dose independent rect. 13 6
291 111.50 humidity 90.0 14400 > th dose dependent rect. 5 4
295 111.52 radiation 1.0 1440 < th dose independent rect. 11 1
303 111.52 radiation 1.0 1440 < th dose dependent rect. 11 1
327 111.58 humidity 90.0 14400 > th dose independent rect. 3 6
329 111.59 wind 5.0 90 < th dose independent sin 15 NA
367 111.69 atmosphere 995.0 14400 > th dose independent rect. 6 13
372 111.69 wind 3.0 90 > th dose dependent rect. 12 23
392 111.76 wind 5.0 90 > th dose independent rect. 12 11
408 111.80 atmosphere 995.0 14400 > th dose independent rect. 6 15
425 111.83 humidity 90.0 14400 < th dose independent rect. 3 5
450 111.88 wind 5.0 270 < th dose independent rect. 17 19
455 111.90 humidity 90.0 14400 > th dose dependent rect. 13 1
460 111.91 wind 5.0 90 < th dose independent rect. 13 23
472 111.93 precipitation 0.1 4320 > th dose dependent rect. 14 4
478 111.94 humidity 90.0 14400 > th dose independent rect. 3 12
537 112.05 atmosphere 995.0 14400 < th dose independent rect. 14 8
563 112.08 wind 5.0 270 < th dose independent rect. 17 9
566 112.08 humidity 90.0 14400 > th dose dependent sin 2 NA
568 112.08 precipitation 0.1 90 > th dose dependent rect. 3 16
573 112.10 temperature 25.0 90 < th dose independent rect. 15 4
589 112.12 atmosphere 995.0 14400 < th dose dependent rect. 14 8
601 112.14 precipitation 0.1 90 > th dose independent rect. 20 23
602 112.14 humidity 50.0 30 > th dose dependent rect. 12 6
614 112.17 wind 1.0 1440 < th dose independent rect. 5 2
622 112.18 atmosphere 995.0 43200 > th dose independent rect. 23 16
633 112.21 wind 7.0 4320 < th dose independent sin 17 NA
663 112.25 humidity 90.0 14400 > th dose independent rect. 24 16
666 112.25 atmosphere 995.0 43200 < th dose dependent rect. 12 14
671 112.26 atmosphere 1000.0 30 > th dose independent rect. 12 20
675 112.27 wind 7.0 4320 > th dose independent sin 17 NA
691 112.31 wind 9.0 14400 < th dose independent rect. 20 7
695 112.31 temperature 30.0 30 < th dose dependent rect. 12 6
697 112.32 precipitation 0.1 4320 > th dose independent rect. 6 2
698 112.32 wind 9.0 14400 < th dose independent rect. 20 4
701 112.32 atmosphere 995.0 43200 < th dose independent rect. 23 17
704 112.32 precipitation 0.1 4320 > th dose dependent rect. 6 2
706 112.33 atmosphere 995.0 43200 > th dose independent sin 5 NA
713 112.33 wind 5.0 90 < th dose independent rect. 18 23
717 112.34 humidity 90.0 14400 > th dose independent sin 4 NA
733 112.35 wind 1.0 90 > th dose dependent rect. 12 11
735 112.36 wind 7.0 14400 > th dose independent rect. 20 4
744 112.37 radiation 10.0 30 > th dose independent rect. 8 4
746 112.37 wind 9.0 43200 > th dose independent rect. 16 16
759 112.39 radiation 1.0 10 > th dose dependent rect. 7 5
768 112.40 radiation 20.0 10 < th dose dependent sin 2 NA
778 112.41 atmosphere 995.0 43200 < th dose independent rect. 18 21
785 112.42 wind 1.0 1440 < th dose dependent rect. 5 2
813 112.45 wind 9.0 4320 < th dose dependent rect. 17 1
816 112.45 wind 5.0 90 > th dose dependent rect. 17 15
819 112.46 wind 9.0 14400 < th dose independent rect. 23 1
827 112.46 atmosphere 995.0 43200 < th dose dependent rect. 12 21
870 112.50 atmosphere 995.0 43200 < th dose dependent sin 17 NA
883 112.52 wind 7.0 720 > th dose independent rect. 17 5
893 112.53 atmosphere 995.0 14400 > th dose independent rect. 13 9
902 112.54 atmosphere 995.0 43200 < th dose independent sin 5 NA
917 112.56 wind 7.0 4320 > th dose dependent sin 16 NA
918 112.56 wind 7.0 14400 > th dose dependent rect. 20 4
931 112.57 atmosphere 995.0 43200 < th dose dependent rect. 14 20
943 112.59 radiation 1.0 4320 < th dose independent rect. 21 8
953 112.59 atmosphere 995.0 43200 < th dose dependent rect. 11 16
960 112.60 humidity 90.0 14400 < th dose independent rect. 3 12
977 112.61 wind 9.0 270 < th dose dependent rect. 18 17
987 112.62 wind 5.0 90 > th dose dependent rect. 15 17