Os11g0229300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os11g0229300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NBS-LRR protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.08 | 0.843 | 8.68 | 1.23 | 0.411 | -3.23 | 0.629 | -1.49 | 0.0273 | 1.4 | 18.1 | 3880 | -- | -- |
| 323.86 | 0.838 | 8.72 | 1.16 | 0.418 | -2.81 | 0.693 | -- | 0.0167 | 1.46 | 18.1 | 3842 | -- | -- |
| 323.67 | 0.838 | 8.68 | 1.23 | 0.41 | -3.24 | -- | -1.57 | 0.0241 | 1.28 | 18.1 | 3879 | -- | -- |
| 325.72 | 0.841 | 8.72 | 1.13 | 0.417 | -2.81 | -- | -- | 0.00746 | 1.38 | 18.04 | 3842 | -- | -- |
| 334 | 0.851 | 8.67 | 1.24 | -- | -3.33 | -- | -1.7 | 0.0293 | -- | 18.1 | 3874 | -- | -- |
| 416.4 | 0.957 | 8.61 | 2.46 | 0.52 | -- | 0.473 | -- | 0.503 | 1.57 | -- | -- | -- | -- |
| 417.29 | 0.957 | 8.61 | 2.44 | 0.519 | -- | -- | -- | 0.501 | 1.55 | -- | -- | -- | -- |
| 336.36 | 0.854 | 8.72 | 1.11 | -- | -2.89 | -- | -- | 0.00274 | -- | 18.08 | 3841 | -- | -- |
| 331.92 | 0.849 | 8.75 | -- | 0.519 | -3.11 | -- | -- | -0.118 | 0.85 | 18.1 | 9876 | -- | -- |
| 433.8 | 0.973 | 8.6 | 2.46 | -- | -- | -- | -- | 0.512 | -- | -- | -- | -- | -- |
| 574.54 | 1.12 | 8.67 | -- | 0.563 | -- | -- | -- | 0.229 | 1.69 | -- | -- | -- | -- |
| 342.24 | 0.862 | 8.77 | -- | -- | -3.47 | -- | -- | -0.233 | -- | 18.1 | 9430 | -- | -- |
| 593.87 | 1.14 | 8.67 | -- | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.39 | wind | 7 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 2 | 271.54 | wind | 7 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 3 | 271.66 | wind | 7 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 4 | 272.19 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 6 | 274.05 | wind | 7 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 10 | 275.23 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 12 | 275.40 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 18 | 275.77 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 20 | 275.83 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 22 | 275.89 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 11 |
| 32 | 276.50 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 9 |
| 34 | 276.64 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 11 |
| 75 | 279.29 | wind | 7 | 14400 | < th | dose independent | sin | 15 | NA |
| 92 | 280.09 | wind | 7 | 14400 | > th | dose independent | sin | 15 | NA |
| 142 | 282.11 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 161 | 282.68 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 185 | 283.12 | wind | 7 | 14400 | > th | dose dependent | sin | 15 | NA |
| 207 | 283.37 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 222 | 283.58 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 224 | 283.59 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 233 | 283.77 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 306 | 284.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 315 | 284.94 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 320 | 285.02 | humidity | 70 | 43200 | > th | dose independent | sin | 4 | NA |
| 333 | 285.12 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 353 | 285.27 | humidity | 70 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 376 | 285.53 | humidity | 60 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 380 | 285.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 391 | 285.62 | humidity | 60 | 43200 | > th | dose dependent | sin | 5 | NA |
| 402 | 285.66 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 9 |
| 416 | 285.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 465 | 286.09 | humidity | 60 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 514 | 286.34 | humidity | 60 | 43200 | > th | dose dependent | rect. | 12 | 21 |
| 524 | 286.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 599 | 286.71 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 603 | 286.72 | humidity | 70 | 43200 | < th | dose independent | sin | 4 | NA |
| 633 | 286.84 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 641 | 286.87 | humidity | 60 | 43200 | > th | dose dependent | no | NA | NA |
| 645 | 286.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 666 | 286.92 | wind | 9 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 680 | 286.95 | humidity | 80 | 43200 | > th | dose independent | sin | 14 | NA |
| 718 | 287.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 820 | 287.32 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 854 | 287.42 | humidity | 80 | 43200 | < th | dose independent | sin | 14 | NA |
| 861 | 287.44 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 933 | 287.66 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |