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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0229200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR type resistance protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.76 (0.0392) R2 : 0.417
β1 : 0.807 (0.144) R2dD : 0.0419 R2D : -0.133
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.5 (0.0837) R2dN8 : 0.55 R2N8 : 0.375
σ : 0.736
deviance : 247.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.54 0.701 3.82 0.983 0.323 -0.544 0.311 -1.75 1.38 1.3 64.17 4194 -- --
225.96 0.7 3.8 1.17 0.319 -1 0.354 -- 1.41 1.24 53.87 4212 -- --
222.92 0.695 3.82 0.972 0.319 -0.547 -- -1.72 1.37 1.37 64.43 4209 -- --
226.14 0.7 3.79 1.13 0.338 -1.04 -- -- 1.39 1.16 54.04 4210 -- --
229.01 0.705 3.81 0.954 -- -0.553 -- -1.67 1.38 -- 65.49 4296 -- --
243.07 0.731 3.77 0.801 0.278 -- 0.139 -- 1.5 1.34 -- -- -- --
243.14 0.73 3.77 0.796 0.278 -- -- -- 1.49 1.38 -- -- -- --
231.93 0.709 3.77 1.11 -- -1.03 -- -- 1.44 -- 52.08 5869 -- --
245.76 0.73 3.75 -- 0.347 -1.07 -- -- 1.54 1.41 82.58 6923 -- --
247.9 0.736 3.76 0.807 -- -- -- -- 1.5 -- -- -- -- --
259.86 0.754 3.79 -- 0.292 -- -- -- 1.41 1.47 -- -- -- --
244.76 0.729 3.8 -- -- -0.961 -- -- 1.39 -- 55.44 15716 -- --
265.09 0.76 3.78 -- -- -- -- -- 1.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.20 precipitation 0.1 43200 > th dose dependent rect. 19 2
2 208.65 wind 1.0 14400 < th dose independent rect. 22 16
5 208.90 wind 1.0 14400 > th dose independent rect. 22 17
28 209.37 wind 1.0 14400 < th dose independent rect. 4 11
42 209.56 wind 1.0 14400 < th dose dependent rect. 22 16
58 209.82 wind 1.0 14400 < th dose independent rect. 24 3
63 209.90 wind 1.0 14400 < th dose independent sin 3 NA
66 209.92 wind 1.0 14400 > th dose independent rect. 4 12
81 210.05 wind 1.0 14400 > th dose independent rect. 24 2
91 210.13 wind 1.0 14400 > th dose independent sin 3 NA
97 210.17 wind 1.0 14400 < th dose dependent rect. 22 11
101 210.21 wind 1.0 14400 < th dose independent rect. 22 11
117 210.32 wind 1.0 14400 > th dose independent rect. 22 11
128 210.36 wind 1.0 14400 < th dose independent rect. 4 23
154 210.51 wind 1.0 14400 < th dose independent rect. 12 22
157 210.52 wind 1.0 14400 < th dose dependent rect. 24 3
159 210.53 wind 1.0 14400 < th dose dependent rect. 4 11
176 210.60 wind 1.0 14400 > th dose independent rect. 12 22
190 210.66 wind 1.0 14400 < th dose independent rect. 24 23
222 210.77 wind 1.0 14400 < th dose dependent rect. 4 23
234 210.80 wind 1.0 14400 < th dose dependent rect. 12 22
238 210.81 wind 1.0 14400 > th dose independent rect. 4 23
257 210.90 precipitation 0.1 43200 > th dose dependent rect. 2 3
263 210.92 precipitation 0.1 43200 < th dose independent rect. 19 2
266 210.92 wind 1.0 14400 < th dose dependent sin 9 NA
267 210.92 precipitation 0.1 43200 < th dose dependent rect. 19 2
274 210.95 precipitation 0.1 43200 > th dose independent rect. 19 2
305 211.07 wind 1.0 14400 < th dose dependent sin 4 NA
316 211.10 wind 1.0 14400 < th dose independent no NA NA
345 211.20 precipitation 0.1 43200 > th dose dependent rect. 22 7
359 211.29 wind 1.0 14400 > th dose independent rect. 18 16
372 211.34 wind 1.0 14400 < th dose independent rect. 2 23
374 211.35 wind 1.0 14400 > th dose independent no NA NA
390 211.40 wind 1.0 14400 < th dose independent rect. 8 23
393 211.40 wind 1.0 14400 < th dose dependent rect. 2 23
399 211.43 wind 1.0 14400 < th dose dependent no NA NA
411 211.48 wind 1.0 14400 < th dose dependent rect. 4 21
417 211.52 wind 1.0 14400 < th dose independent rect. 4 19
429 211.56 wind 1.0 14400 < th dose dependent rect. 8 23
450 211.65 precipitation 0.1 43200 > th dose independent rect. 22 7
457 211.67 precipitation 0.1 43200 < th dose independent rect. 22 7
460 211.67 precipitation 0.1 43200 < th dose dependent rect. 22 7
474 211.72 wind 1.0 14400 > th dose independent rect. 5 4
479 211.73 wind 1.0 14400 > th dose independent rect. 2 23
488 211.77 temperature 25.0 43200 > th dose dependent rect. 4 1
508 211.86 wind 1.0 14400 > th dose independent rect. 8 23
511 211.88 humidity 70.0 43200 > th dose independent rect. 13 2
517 211.90 temperature 30.0 43200 > th dose dependent rect. 18 1
558 212.02 wind 1.0 14400 < th dose independent rect. 5 4
566 212.07 precipitation 0.1 43200 > th dose independent rect. 2 3
578 212.12 precipitation 0.1 43200 < th dose independent rect. 2 3
579 212.12 precipitation 0.1 43200 < th dose dependent rect. 2 3
613 212.32 humidity 70.0 43200 < th dose independent rect. 14 1
618 212.34 temperature 30.0 43200 < th dose independent rect. 18 9
619 212.34 temperature 30.0 43200 < th dose independent rect. 18 11
622 212.35 temperature 30.0 43200 < th dose independent rect. 18 6
624 212.36 temperature 30.0 43200 < th dose independent rect. 18 4
627 212.37 temperature 30.0 43200 < th dose independent rect. 18 13
660 212.50 wind 1.0 43200 < th dose independent rect. 12 1
682 212.61 wind 1.0 14400 > th dose independent rect. 4 19
704 212.72 precipitation 0.1 43200 > th dose independent rect. 22 2
705 212.72 precipitation 0.1 43200 > th dose dependent rect. 22 2
715 212.80 precipitation 0.1 43200 < th dose independent rect. 22 2
716 212.80 precipitation 0.1 43200 < th dose dependent rect. 22 2
742 213.06 wind 9.0 14400 < th dose independent rect. 17 1
749 213.10 precipitation 0.1 43200 > th dose independent rect. 21 9
750 213.10 precipitation 0.1 43200 < th dose independent rect. 21 9
752 213.10 precipitation 0.1 43200 < th dose dependent rect. 21 9
763 213.20 wind 7.0 14400 > th dose dependent rect. 17 1
773 213.32 wind 1.0 14400 > th dose independent rect. 8 1
780 213.37 wind 1.0 14400 < th dose dependent rect. 5 1
798 213.55 radiation 10.0 43200 > th dose independent rect. 12 4
801 213.57 wind 1.0 43200 > th dose independent rect. 12 1
818 213.68 wind 1.0 14400 < th dose dependent rect. 5 4
833 213.70 radiation 10.0 43200 > th dose independent sin 18 NA
857 213.78 precipitation 0.1 43200 > th dose independent rect. 19 11
864 213.80 precipitation 0.1 43200 < th dose independent rect. 19 11
876 213.80 precipitation 0.1 43200 < th dose dependent rect. 19 11
892 213.91 precipitation 0.1 43200 > th dose dependent rect. 19 12
920 214.04 wind 9.0 14400 > th dose independent rect. 17 1
921 214.04 precipitation 0.1 43200 > th dose independent rect. 2 1
922 214.05 precipitation 0.1 43200 > th dose dependent rect. 17 3
948 214.22 temperature 30.0 43200 > th dose independent rect. 18 1
969 214.25 wind 1.0 14400 < th dose independent rect. 8 1