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Os11g0228600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR disease resistance protein homologue.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.34 (0.0452) R2 : 0.435
β1 : 2.38 (0.166) R2dD : 0.257 R2D : 0.124
β2 : 0.827 (0.11) R2dC : 0.066 R2C : 0.0433
β3 : 1.7 (0.187) R2dE : 0.115 R2E : 0.0114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.78 (0.583) R2dD*E : 0.0557 R2D*E : -0.0461
γ1 : 0.928 (0.099) R2dN8 : 0.162 R2N8 : -0.00747
σ : 0.836
deviance : 322.18
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C
peak time of C : 21.5
E
wheather : radiation
threshold : 17.97
memory length : 1254
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.5
open length of G : 0.63

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.55 0.846 6.34 2.33 0.785 1.67 0.432 -3.62 0.947 21.4 19.08 1258 11.4 0.867
341.93 0.861 6.34 2.24 0.642 1.41 0.235 -- 0.916 21.1 25.6 1195 11.6 1.67
322.18 0.836 6.34 2.38 0.827 1.7 -- -3.78 0.928 21.5 17.97 1254 11.5 0.63
340.2 0.859 6.36 2.15 0.696 1.24 -- -- 0.889 21.2 22.15 1154 12.8 0.533
357.39 0.88 6.33 2.36 -- 1.86 -- -3.65 0.973 -- 18.89 1208 11.5 0.65
395.55 0.932 6.41 2.07 0.88 -- 0.0415 -- 0.669 21.6 -- -- -- --
395.55 0.931 6.41 2.07 0.88 -- -- -- 0.669 21.6 -- -- -- --
360.59 0.884 6.36 2.21 -- 1.43 -- -- 0.92 -- 28.21 1142 12.8 0.5
444.64 0.982 6.38 -- 0.687 1.65 -- -- 0.867 20.6 22.07 1150 13 0.0167
441.26 0.982 6.38 2.08 -- -- -- -- 0.667 -- -- -- -- --
508.69 1.06 6.46 -- 0.884 -- -- -- 0.439 21.7 -- -- -- --
465.49 1 6.38 -- -- 1.76 -- -- 0.804 -- 23.02 1262 13 0.0167
555.23 1.1 6.43 -- -- -- -- -- 0.437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.58 wind 1 14400 > th dose independent rect. 24 2
3 337.96 wind 1 14400 < th dose independent rect. 24 2
4 341.37 wind 3 14400 < th dose dependent rect. 1 1
5 341.90 radiation 20 1440 < th dose dependent rect. 11 1
6 342.26 radiation 1 1440 > th dose independent rect. 9 4
8 342.60 radiation 1 1440 < th dose independent rect. 10 3
9 342.60 radiation 1 1440 < th dose dependent rect. 10 3
37 344.79 radiation 1 1440 > th dose independent rect. 13 1
59 346.54 humidity 50 14400 > th dose dependent rect. 5 2
65 346.77 wind 1 1440 < th dose dependent rect. 6 1
78 347.67 radiation 20 1440 < th dose independent rect. 11 3
82 347.95 wind 7 43200 > th dose dependent rect. 16 1
90 348.60 temperature 20 270 > th dose independent rect. 21 9
91 348.84 temperature 20 270 > th dose independent sin 11 NA
96 349.44 humidity 90 14400 < th dose independent rect. 6 1
98 349.60 temperature 20 270 > th dose independent rect. 21 7
102 349.71 temperature 20 30 > th dose independent rect. 23 5
110 349.89 wind 9 14400 > th dose independent rect. 23 2
115 350.09 wind 9 14400 > th dose dependent rect. 23 2
127 350.42 radiation 10 1440 < th dose dependent rect. 9 19
129 350.46 radiation 10 1440 < th dose dependent rect. 9 13
136 350.52 wind 1 1440 < th dose independent rect. 6 1
147 351.02 radiation 20 1440 < th dose dependent rect. 11 17
151 351.05 radiation 20 1440 < th dose dependent rect. 11 11
158 351.12 temperature 20 1440 > th dose independent rect. 6 1
165 351.25 temperature 20 10 > th dose independent sin 9 NA
170 351.53 temperature 20 30 > th dose independent rect. 20 8
174 351.59 humidity 90 14400 > th dose independent rect. 6 1
176 351.62 temperature 20 30 > th dose independent rect. 14 14
183 351.84 wind 7 43200 > th dose dependent rect. 16 4
200 352.21 wind 3 14400 < th dose dependent rect. 23 8
220 352.37 wind 3 14400 < th dose dependent rect. 1 5
239 352.71 wind 7 43200 > th dose independent rect. 17 2
246 352.82 wind 5 14400 < th dose independent rect. 9 1
250 352.86 humidity 50 14400 > th dose dependent rect. 2 6
251 352.90 wind 7 43200 < th dose independent rect. 17 2
254 352.96 temperature 20 1440 < th dose independent rect. 6 1
270 353.06 atmosphere 1005 270 < th dose independent rect. 22 9
289 353.23 wind 5 14400 > th dose independent rect. 9 1
295 353.27 radiation 1 1440 > th dose independent rect. 9 1
300 353.31 wind 1 43200 > th dose independent rect. 5 9
303 353.33 atmosphere 1005 720 < th dose independent rect. 20 5
313 353.43 radiation 10 1440 < th dose independent rect. 12 16
316 353.46 radiation 10 1440 < th dose independent rect. 12 10
321 353.49 wind 7 43200 > th dose independent rect. 16 4
332 353.53 wind 1 1440 > th dose independent rect. 6 1
333 353.53 wind 7 14400 < th dose independent rect. 23 2
345 353.56 radiation 10 1440 < th dose dependent sin 19 NA
388 353.83 wind 1 43200 < th dose independent rect. 5 9
407 354.13 radiation 1 1440 > th dose independent rect. 4 1
417 354.13 radiation 1 1440 > th dose dependent rect. 4 1
431 354.19 humidity 90 14400 > th dose dependent rect. 12 1
436 354.23 temperature 20 1440 < th dose independent rect. 22 2
454 354.31 atmosphere 995 43200 < th dose independent rect. 21 18
459 354.32 atmosphere 995 43200 < th dose dependent rect. 11 18
473 354.43 atmosphere 995 43200 < th dose dependent rect. 13 20
493 354.72 wind 3 14400 < th dose dependent rect. 24 14
511 354.82 atmosphere 995 43200 > th dose independent rect. 21 18
520 354.88 atmosphere 995 43200 < th dose dependent rect. 12 15
527 354.97 atmosphere 995 43200 > th dose independent sin 6 NA
533 354.99 wind 3 14400 < th dose dependent sin 8 NA
536 355.01 temperature 20 10 > th dose independent rect. 20 10
552 355.12 wind 1 43200 < th dose independent rect. 8 6
554 355.13 wind 1 43200 < th dose dependent rect. 12 1
555 355.14 humidity 80 1440 > th dose independent rect. 13 1
573 355.24 wind 1 43200 < th dose independent rect. 12 1
581 355.29 temperature 20 1440 > th dose independent rect. 22 2
601 355.39 wind 1 43200 < th dose independent rect. 6 6
603 355.40 wind 1 43200 > th dose independent rect. 6 5
613 355.42 wind 3 14400 < th dose dependent rect. 3 3
629 355.46 atmosphere 995 43200 < th dose independent sin 6 NA
639 355.47 humidity 90 14400 > th dose dependent rect. 5 10
641 355.48 wind 7 4320 > th dose independent rect. 18 1
651 355.51 wind 3 43200 < th dose dependent rect. 6 2
674 355.62 wind 1 43200 < th dose dependent rect. 8 6
677 355.64 humidity 90 720 > th dose dependent rect. 20 1
682 355.66 wind 1 43200 > th dose independent rect. 5 18
717 355.87 wind 1 43200 < th dose independent rect. 5 19
733 356.04 wind 1 43200 < th dose dependent rect. 6 6
740 356.16 wind 1 43200 > th dose independent rect. 12 1
790 356.39 atmosphere 995 43200 < th dose dependent sin 17 NA
793 356.41 wind 1 43200 > th dose independent rect. 8 6
795 356.41 wind 1 43200 < th dose independent rect. 5 21
802 356.46 wind 9 14400 > th dose independent rect. 20 4
821 356.56 wind 9 14400 < th dose independent rect. 20 4
828 356.58 wind 5 14400 < th dose independent rect. 6 4
829 356.58 atmosphere 1010 10 < th dose dependent sin 7 NA
831 356.58 atmosphere 1010 90 < th dose dependent rect. 23 10
841 356.64 humidity 80 1440 < th dose independent rect. 12 2
854 356.68 radiation 10 1440 < th dose independent sin 17 NA
856 356.68 wind 5 14400 > th dose independent rect. 6 4
863 356.69 temperature 20 720 > th dose independent rect. 14 14
874 356.72 temperature 20 30 > th dose independent rect. 17 11
875 356.72 wind 1 43200 > th dose independent rect. 5 21
913 356.82 wind 7 4320 < th dose independent rect. 18 1
919 356.84 temperature 20 10 > th dose independent rect. 1 3
921 356.84 humidity 90 14400 < th dose dependent rect. 6 1
967 357.04 wind 9 14400 < th dose independent rect. 20 7