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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0227800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0406) R2 : 0.742
β1 : 1.61 (0.149) R2dD : 0.0726 R2D : -0.00803
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.578 (0.0843) R2dE : 0.0329 R2E : -0.021
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.41 (0.0933) R2dN8 : 0.619 R2N8 : 0.648
σ : 0.74
deviance : 252.65
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.08
memory length : 43
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.65 0.738 6.14 1.46 0.163 -0.569 1.67 -0.321 -2.41 18.2 25.05 20 -- --
247.01 0.732 6.13 1.55 0.15 -0.57 1.6 -- -2.38 18.6 25 20 -- --
252.92 0.741 6.13 1.5 0.196 -0.589 -- -0.121 -2.37 16.5 25.1 20 -- --
252.98 0.741 6.13 1.53 0.197 -0.595 -- -- -2.36 16.5 25.06 20 -- --
252.63 0.74 6.14 1.61 -- -0.564 -- -0.0577 -2.41 -- 24.1 43 -- --
273.48 0.775 6.2 1.42 0.0297 -- 1.36 -- -2.69 19.6 -- -- -- --
275.16 0.777 6.2 1.38 0.239 -- -- -- -2.69 1.41 -- -- -- --
252.65 0.74 6.13 1.61 -- -0.578 -- -- -2.41 -- 24.08 43 -- --
312.59 0.828 6.18 -- 0.0739 -0.431 -- -- -2.62 19.3 25.01 22 -- --
278.68 0.78 6.2 1.39 -- -- -- -- -2.68 -- -- -- -- --
325.33 0.844 6.23 -- 0.264 -- -- -- -2.84 1.59 -- -- -- --
312.88 0.827 6.18 -- -- -0.423 -- -- -2.62 -- 25.04 20 -- --
329.58 0.847 6.23 -- -- -- -- -- -2.84 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.15 precipitation 0.1 14400 > th dose dependent rect. 17 1
2 241.81 temperature 25.0 30 < th dose independent rect. 5 23
4 241.85 wind 9.0 14400 > th dose dependent rect. 17 6
5 241.85 wind 9.0 14400 > th dose dependent rect. 17 8
13 242.29 wind 9.0 14400 > th dose dependent rect. 17 18
15 242.67 precipitation 0.1 14400 < th dose independent rect. 17 1
16 242.67 precipitation 0.1 14400 < th dose dependent rect. 17 1
18 242.96 precipitation 0.1 4320 > th dose dependent rect. 12 6
19 243.00 precipitation 0.1 14400 > th dose independent rect. 17 1
27 243.11 precipitation 0.1 4320 > th dose dependent rect. 9 9
28 243.16 precipitation 0.1 4320 > th dose independent rect. 15 3
29 243.17 precipitation 0.1 4320 < th dose independent rect. 15 3
30 243.17 precipitation 0.1 4320 < th dose dependent rect. 15 3
50 243.69 wind 7.0 14400 > th dose dependent rect. 20 2
53 243.83 wind 9.0 14400 > th dose independent rect. 17 4
56 243.89 wind 9.0 14400 < th dose independent rect. 20 3
58 243.93 wind 9.0 14400 > th dose independent rect. 20 1
60 243.96 wind 9.0 14400 > th dose independent rect. 20 4
67 244.21 precipitation 0.1 4320 < th dose independent rect. 12 6
68 244.21 precipitation 0.1 4320 < th dose dependent rect. 12 6
69 244.22 wind 9.0 14400 < th dose independent rect. 20 7
72 244.27 wind 9.0 14400 < th dose independent rect. 17 4
91 244.53 precipitation 0.1 4320 > th dose independent rect. 12 6
97 244.58 temperature 25.0 30 > th dose independent rect. 8 23
101 244.64 precipitation 0.1 4320 < th dose independent rect. 9 9
102 244.64 precipitation 0.1 4320 < th dose dependent rect. 9 9
126 244.95 wind 9.0 14400 < th dose independent rect. 17 10
135 245.14 temperature 25.0 30 > th dose independent rect. 24 22
140 245.21 precipitation 0.1 4320 > th dose independent rect. 9 9
149 245.33 humidity 90.0 1440 < th dose dependent rect. 13 1
169 245.57 wind 9.0 14400 > th dose independent rect. 17 18
185 245.78 humidity 90.0 1440 < th dose dependent rect. 13 3
186 245.79 humidity 60.0 720 > th dose independent rect. 5 19
190 245.87 humidity 90.0 1440 < th dose dependent rect. 15 1
191 245.87 humidity 50.0 30 > th dose dependent rect. 5 23
194 245.91 atmosphere 1000.0 14400 < th dose independent rect. 12 1
209 246.11 atmosphere 1000.0 14400 > th dose independent rect. 12 1
211 246.14 humidity 50.0 1440 > th dose dependent rect. 13 1
233 246.34 humidity 50.0 1440 > th dose dependent rect. 15 1
235 246.40 wind 9.0 14400 < th dose independent rect. 17 18
254 246.56 humidity 50.0 1440 > th dose dependent rect. 13 3
258 246.58 humidity 50.0 720 > th dose dependent rect. 11 21
269 246.67 humidity 60.0 1440 > th dose independent rect. 15 1
272 246.71 temperature 30.0 30 < th dose dependent rect. 5 23
276 246.79 humidity 60.0 720 > th dose independent rect. 11 21
279 246.83 humidity 60.0 1440 < th dose dependent rect. 15 1
283 246.91 temperature 25.0 30 > th dose independent rect. 11 23
298 247.05 humidity 50.0 1440 > th dose dependent rect. 11 5
317 247.20 humidity 50.0 1440 > th dose dependent rect. 11 7
341 247.31 humidity 50.0 720 > th dose dependent rect. 5 19
348 247.35 wind 9.0 14400 > th dose dependent rect. 20 15
350 247.36 humidity 60.0 720 > th dose independent rect. 14 18
357 247.38 temperature 25.0 30 > th dose independent rect. 15 23
361 247.40 wind 9.0 14400 > th dose dependent sin 11 NA
394 247.62 humidity 80.0 1440 > th dose independent rect. 11 3
419 247.73 humidity 60.0 720 > th dose independent sin 22 NA
424 247.75 humidity 80.0 1440 < th dose independent rect. 11 3
426 247.75 radiation 1.0 43200 < th dose dependent rect. 1 1
437 247.80 wind 7.0 43200 < th dose independent rect. 14 8
438 247.81 humidity 50.0 720 > th dose dependent sin 21 NA
473 247.97 temperature 25.0 30 > th dose independent rect. 4 22
504 248.09 humidity 60.0 720 > th dose independent rect. 11 6
513 248.12 temperature 25.0 30 > th dose independent no NA NA
530 248.16 temperature 25.0 10 > th dose independent rect. 6 23
532 248.17 wind 9.0 14400 < th dose independent rect. 17 1
537 248.18 humidity 50.0 720 > th dose dependent rect. 7 16
569 248.29 temperature 25.0 30 > th dose independent rect. 13 23
573 248.31 temperature 25.0 30 < th dose independent rect. 13 23
586 248.36 temperature 25.0 30 < th dose independent rect. 1 23
588 248.37 temperature 25.0 30 < th dose independent rect. 23 23
591 248.38 humidity 70.0 1440 > th dose dependent rect. 11 3
606 248.42 temperature 25.0 30 < th dose independent no NA NA
610 248.42 temperature 25.0 30 < th dose independent rect. 21 23
621 248.45 temperature 25.0 30 < th dose independent rect. 17 23
627 248.46 temperature 25.0 30 < th dose independent rect. 15 23
636 248.48 temperature 25.0 30 < th dose independent rect. 11 23
639 248.49 atmosphere 1000.0 14400 < th dose independent rect. 19 1
643 248.50 humidity 60.0 720 > th dose independent sin 12 NA
647 248.51 temperature 25.0 30 < th dose independent rect. 9 23
652 248.52 atmosphere 1000.0 14400 < th dose independent rect. 10 10
670 248.55 humidity 80.0 1440 > th dose independent rect. 13 1
678 248.58 temperature 25.0 30 < th dose independent rect. 19 23
681 248.59 humidity 60.0 720 > th dose independent rect. 10 8
707 248.65 temperature 25.0 30 < th dose independent rect. 7 23
715 248.67 atmosphere 1000.0 14400 < th dose independent sin 0 NA
731 248.70 atmosphere 1000.0 14400 > th dose independent rect. 19 1
756 248.74 temperature 10.0 30 > th dose dependent rect. 23 23
757 248.75 humidity 60.0 1440 < th dose independent rect. 15 1
777 248.78 atmosphere 1000.0 14400 < th dose independent rect. 15 1
848 248.89 atmosphere 1000.0 14400 > th dose independent sin 0 NA
853 248.89 wind 9.0 14400 < th dose independent rect. 20 15
916 248.97 humidity 60.0 720 > th dose independent rect. 9 10
966 249.03 wind 7.0 43200 > th dose independent rect. 14 16
994 249.08 atmosphere 1005.0 14400 < th dose dependent rect. 12 1