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Os11g0227200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR disease resistance protein homologue.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.73 (0.032) R2 : 0.591
β1 : 1.54 (0.134) R2dD : 0.166 R2D : 0.16
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.41 (0.156) R2dE : 0.106 R2E : 0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.971 (0.0724) R2dN8 : 0.253 R2N8 : 0.199
σ : 0.587
deviance : 158.92
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.3
memory length : 2482
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.77 0.579 9.77 1.43 0.268 0.8 -1.07 -1.53 0.948 2.62 19.2 2097 -- --
153.15 0.576 9.73 1.55 0.216 1.27 -0.967 -- 0.977 2.53 18.49 2413 -- --
154.25 0.578 9.78 1.39 0.257 0.813 -- -1.62 0.932 2.13 19.2 2564 -- --
155.22 0.58 9.73 1.58 0.238 1.34 -- -- 1 0.245 18.35 2551 -- --
157.74 0.585 9.78 1.37 -- 0.882 -- -1.56 0.924 -- 19.1 2529 -- --
177.36 0.624 9.68 2.12 0.309 -- -1.06 -- 1.21 2.1 -- -- -- --
180.67 0.629 9.68 2.15 0.323 -- -- -- 1.22 0.531 -- -- -- --
158.92 0.587 9.73 1.54 -- 1.41 -- -- 0.971 -- 18.3 2482 -- --
188.87 0.64 9.75 -- 0.206 1.73 -- -- 0.704 1.23 18.4 22770 -- --
187.23 0.639 9.67 2.16 -- -- -- -- 1.22 -- -- -- -- --
302.85 0.814 9.73 -- 0.357 -- -- -- 0.975 0.83 -- -- -- --
187.95 0.639 9.81 -- -- 1.87 -- -- 0.621 -- 16.63 47520 -- --
310.79 0.823 9.73 -- -- -- -- -- 0.981 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.78 radiation 20 1440 < th dose dependent rect. 11 1
2 148.48 radiation 20 1440 < th dose independent rect. 11 2
6 150.99 wind 1 14400 < th dose independent rect. 24 2
7 151.00 wind 1 14400 > th dose independent rect. 24 2
8 151.07 temperature 20 1440 > th dose independent rect. 6 1
10 151.46 atmosphere 995 43200 > th dose independent rect. 21 18
13 151.50 atmosphere 995 43200 < th dose dependent rect. 12 15
15 151.66 temperature 20 4320 > th dose independent rect. 19 2
16 151.72 atmosphere 995 43200 < th dose independent rect. 18 21
17 151.73 atmosphere 995 43200 < th dose independent rect. 21 18
20 151.74 atmosphere 995 43200 < th dose dependent rect. 12 20
29 152.08 atmosphere 995 43200 < th dose dependent sin 16 NA
30 152.09 radiation 1 1440 > th dose independent rect. 9 4
33 152.19 wind 9 43200 < th dose independent rect. 16 16
37 152.21 radiation 10 1440 < th dose independent rect. 11 7
38 152.23 wind 7 43200 > th dose independent rect. 17 13
39 152.24 radiation 30 4320 < th dose independent rect. 6 2
40 152.24 temperature 20 1440 > th dose independent rect. 19 8
41 152.25 atmosphere 995 43200 > th dose independent sin 6 NA
42 152.25 temperature 20 1440 < th dose independent rect. 6 1
45 152.27 radiation 30 4320 < th dose independent rect. 17 15
46 152.28 wind 9 43200 > th dose independent rect. 16 16
49 152.30 wind 7 43200 < th dose independent rect. 17 13
52 152.31 radiation 30 4320 < th dose independent rect. 2 6
54 152.32 radiation 10 1440 < th dose independent rect. 13 4
55 152.32 wind 7 43200 > th dose dependent rect. 16 17
62 152.36 temperature 20 1440 < th dose independent rect. 19 8
66 152.37 radiation 30 4320 < th dose independent rect. 21 11
71 152.39 radiation 30 4320 < th dose independent rect. 23 9
77 152.43 radiation 30 4320 < th dose independent rect. 4 4
93 152.54 temperature 20 1440 < th dose independent rect. 21 4
102 152.56 radiation 10 1440 < th dose independent rect. 11 16
130 152.66 radiation 20 4320 > th dose dependent rect. 6 2
161 152.86 temperature 20 4320 < th dose independent rect. 19 2
179 152.94 wind 7 43200 > th dose independent sin 12 NA
180 152.94 wind 7 43200 < th dose independent sin 12 NA
194 153.09 atmosphere 995 43200 < th dose independent sin 5 NA
200 153.10 wind 7 43200 > th dose dependent sin 12 NA
202 153.12 radiation 1 1440 < th dose independent rect. 10 3
204 153.12 radiation 1 1440 < th dose dependent rect. 10 3
216 153.20 wind 9 43200 < th dose independent rect. 16 4
218 153.21 wind 9 43200 < th dose independent rect. 16 2
236 153.29 temperature 20 1440 < th dose independent rect. 19 12
244 153.34 temperature 20 1440 < th dose independent rect. 23 1
253 153.37 temperature 20 1440 > th dose independent rect. 19 12
262 153.43 radiation 10 1440 < th dose independent sin 17 NA
268 153.44 temperature 20 1440 > th dose independent sin 12 NA
269 153.44 wind 9 43200 > th dose independent rect. 16 4
271 153.45 temperature 20 1440 < th dose independent sin 12 NA
284 153.52 wind 9 43200 > th dose independent rect. 16 2
309 153.58 temperature 20 1440 > th dose independent rect. 23 1
319 153.61 radiation 1 1440 < th dose independent rect. 13 1
322 153.61 radiation 1 1440 < th dose dependent rect. 13 1
333 153.66 radiation 30 4320 > th dose independent rect. 7 1
561 154.22 temperature 20 1440 < th dose independent rect. 12 19
570 154.26 temperature 20 1440 > th dose independent rect. 12 19
647 154.47 temperature 20 1440 > th dose independent rect. 12 16
659 154.49 temperature 20 1440 < th dose independent rect. 12 16
714 154.61 wind 9 14400 > th dose dependent rect. 23 1
746 154.67 wind 7 43200 > th dose dependent rect. 19 1
747 154.68 wind 9 14400 > th dose independent rect. 23 1
819 154.82 wind 9 14400 < th dose independent rect. 23 1
853 154.90 humidity 70 14400 < th dose dependent rect. 21 1
919 155.06 radiation 1 1440 > th dose independent rect. 13 1
935 155.08 humidity 90 14400 > th dose dependent rect. 3 13