Os11g0227100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0227100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.74 | 0.592 | 2.79 | -0.0453 | 0.0818 | 0.706 | -0.0431 | 1.92 | -0.0478 | 7.23 | 19.7 | 281 | -- | -- |
| 168.79 | 0.605 | 2.75 | 0.224 | 0.17 | 0.452 | 0.525 | -- | 0.0409 | 5.37 | 19.7 | 280 | -- | -- |
| 158.74 | 0.587 | 2.79 | -0.0456 | 0.0819 | 0.704 | -- | 1.92 | -0.0478 | 7.27 | 19.7 | 280 | -- | -- |
| 169.08 | 0.606 | 2.75 | 0.185 | 0.112 | 0.403 | -- | -- | 0.0224 | 6.74 | 19.79 | 278 | -- | -- |
| 159.09 | 0.587 | 2.79 | -0.0436 | -- | 0.721 | -- | 1.95 | -0.0454 | -- | 19.71 | 280 | -- | -- |
| 172.25 | 0.615 | 2.76 | 0.0465 | 0.159 | -- | 0.597 | -- | -0.0652 | 5.54 | -- | -- | -- | -- |
| 173.11 | 0.616 | 2.76 | 0.0492 | 0.164 | -- | -- | -- | -0.0676 | 5.87 | -- | -- | -- | -- |
| 169.77 | 0.607 | 2.75 | 0.19 | -- | 0.417 | -- | -- | 0.00413 | -- | 19.79 | 280 | -- | -- |
| 169.8 | 0.607 | 2.75 | -- | 0.128 | 0.349 | -- | -- | -0.0185 | 6.77 | 19.7 | 280 | -- | -- |
| 174.5 | 0.617 | 2.76 | 0.0542 | -- | -- | -- | -- | -0.0638 | -- | -- | -- | -- | -- |
| 173.18 | 0.616 | 2.76 | -- | 0.164 | -- | -- | -- | -0.0731 | 5.85 | -- | -- | -- | -- |
| 170.64 | 0.608 | 2.76 | -- | -- | 0.363 | -- | -- | -0.0237 | -- | 19.7 | 280 | -- | -- |
| 174.58 | 0.617 | 2.77 | -- | -- | -- | -- | -- | -0.0698 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.01 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 146.35 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 1 |
| 4 | 155.10 | radiation | 10 | 90 | < th | dose dependent | rect. | 8 | 2 |
| 5 | 155.70 | temperature | 20 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 6 | 155.74 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 41 | 157.08 | temperature | 20 | 10 | < th | dose dependent | sin | 3 | NA |
| 57 | 158.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 63 | 158.93 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 1 |
| 66 | 158.93 | humidity | 80 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 72 | 158.99 | humidity | 90 | 90 | < th | dose independent | rect. | 3 | 3 |
| 113 | 159.55 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 117 | 159.62 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 122 | 159.66 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 126 | 159.67 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 130 | 159.69 | humidity | 80 | 720 | < th | dose independent | rect. | 24 | 1 |
| 132 | 159.69 | humidity | 80 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 134 | 159.70 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 17 |
| 148 | 159.94 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 15 |
| 165 | 160.17 | humidity | 90 | 30 | < th | dose dependent | rect. | 5 | 2 |
| 173 | 160.27 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 17 |
| 174 | 160.28 | humidity | 80 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 177 | 160.33 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 190 | 160.47 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 5 |
| 192 | 160.48 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 20 |
| 193 | 160.49 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 22 |
| 199 | 160.54 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 9 |
| 207 | 160.57 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 211 | 160.60 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 222 | 160.69 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 22 |
| 227 | 160.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 238 | 160.76 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 16 |
| 257 | 160.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 267 | 160.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 2 |
| 269 | 160.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 277 | 160.90 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 279 | 160.90 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 299 | 160.98 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 300 | 160.98 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 301 | 160.98 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 321 | 161.00 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 334 | 161.02 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 357 | 161.07 | humidity | 90 | 90 | < th | dose independent | rect. | 5 | 1 |
| 374 | 161.10 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 6 |
| 411 | 161.18 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 9 |
| 415 | 161.19 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 418 | 161.19 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 12 |
| 446 | 161.22 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 457 | 161.25 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 23 |
| 458 | 161.25 | temperature | 20 | 270 | < th | dose dependent | sin | 9 | NA |
| 480 | 161.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 481 | 161.32 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 489 | 161.34 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 497 | 161.37 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 12 |
| 512 | 161.40 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 2 |
| 514 | 161.40 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 7 |
| 534 | 161.45 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 540 | 161.46 | temperature | 20 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 552 | 161.47 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 558 | 161.48 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 565 | 161.48 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 567 | 161.49 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 575 | 161.49 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 21 |
| 639 | 161.54 | wind | 3 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 701 | 161.65 | wind | 3 | 10 | > th | dose independent | rect. | 5 | 1 |
| 767 | 161.77 | wind | 3 | 10 | > th | dose independent | rect. | 2 | 4 |
| 794 | 161.82 | temperature | 20 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 803 | 161.84 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 867 | 161.92 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 23 |
| 920 | 162.01 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 977 | 162.11 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 16 |