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Os11g0226900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0385) R2 : 0.577
β1 : -0.202 (0.144) R2dD : 0.00418 R2D : -0.00826
β2 : 1.78 (0.0861) R2dC : 0.398 R2C : 0.422
β3 : 0.576 (0.199) R2dE : 0.0164 R2E : -0.0448
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.65 (0.601) R2dD*E : 0.18 R2D*E : 0.159
γ1 : 0.13 (0.0809) R2dN8 : 0.0044 R2N8 : -0.00617
σ : 0.674
deviance : 209.61
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C
peak time of C : 23
E
wheather : radiation
threshold : 19.82
memory length : 5318
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.7
open length of G : 1.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.63 0.685 10.6 -0.277 1.77 0.407 0.722 5.82 0.121 22.9 19.83 4969 5.8 2.03
267.17 0.761 10.5 0.0273 1.79 0.633 0.0982 -- 0.114 23.2 10.01 11576 6.57 2.28
209.61 0.674 10.6 -0.202 1.78 0.576 -- 6.65 0.13 23 19.82 5318 5.7 1.93
262.4 0.754 10.5 -0.0395 1.83 0.611 -- -- 0.0891 23 10 11480 8.12 2.08
403.62 0.936 10.6 -0.254 -- 0.527 -- 7.71 0.111 -- 19.69 4968 5.73 1.91
277.26 0.781 10.5 -0.0954 1.84 -- 0.317 -- 0.275 23.1 -- -- -- --
277.69 0.78 10.5 -0.108 1.84 -- -- -- 0.274 23.1 -- -- -- --
451.13 0.994 10.4 -0.0343 -- -2.09 -- -- 0.274 -- 10.16 12692 9.03 2.22
261.82 0.754 10.5 -- 1.8 0.647 -- -- 0.0982 23.1 10 11433 9.45 1.77
488.83 1.03 10.4 -0.066 -- -- -- -- 0.289 -- -- -- -- --
278 0.78 10.5 -- 1.84 -- -- -- 0.286 23.1 -- -- -- --
299.76 0.806 10.5 -- -- 1.58 -- -- -0.0963 -- -56.28 9350 16.5 3.11
488.95 1.03 10.4 -- -- -- -- -- 0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.80 humidity 80.0 14400 > th dose dependent rect. 6 1
3 207.01 humidity 90.0 14400 < th dose independent rect. 6 1
4 207.57 humidity 80.0 14400 > th dose dependent rect. 2 6
16 209.43 humidity 80.0 14400 > th dose dependent rect. 23 9
22 210.43 humidity 90.0 14400 > th dose independent rect. 6 1
42 213.90 humidity 80.0 14400 > th dose dependent rect. 23 1
43 213.98 humidity 50.0 14400 > th dose dependent rect. 22 10
50 214.36 humidity 90.0 14400 > th dose dependent rect. 4 11
75 215.49 humidity 80.0 14400 > th dose dependent sin 8 NA
94 216.03 humidity 90.0 14400 > th dose dependent sin 3 NA
111 216.35 humidity 90.0 14400 < th dose independent rect. 23 17
118 216.50 humidity 50.0 14400 > th dose dependent rect. 23 1
166 217.45 humidity 90.0 14400 < th dose independent rect. 23 1
181 217.84 humidity 90.0 14400 > th dose independent rect. 23 17
215 218.46 wind 7.0 43200 > th dose independent rect. 18 1
234 218.77 precipitation 0.1 43200 > th dose dependent rect. 1 7
237 218.82 precipitation 0.1 43200 < th dose independent rect. 1 7
238 218.82 precipitation 0.1 43200 < th dose dependent rect. 1 7
250 218.98 humidity 90.0 14400 < th dose independent rect. 23 9
259 219.08 precipitation 0.1 43200 > th dose independent rect. 1 7
311 219.67 wind 7.0 43200 > th dose dependent rect. 18 1
325 219.91 precipitation 0.1 43200 > th dose independent rect. 3 1
328 219.96 precipitation 0.1 43200 < th dose independent rect. 3 1
329 219.96 precipitation 0.1 43200 < th dose dependent rect. 3 1
339 220.03 precipitation 0.1 43200 > th dose independent rect. 23 9
404 220.78 humidity 90.0 14400 < th dose independent rect. 14 1
427 220.99 wind 7.0 43200 < th dose independent rect. 18 1
429 221.00 humidity 90.0 14400 < th dose independent rect. 2 6
457 221.37 radiation 1.0 14400 < th dose independent rect. 23 18
466 221.39 radiation 1.0 14400 > th dose independent rect. 4 13
477 221.41 radiation 1.0 14400 < th dose independent rect. 4 13
530 221.75 humidity 90.0 14400 < th dose independent sin 6 NA
531 221.75 precipitation 0.1 43200 > th dose dependent rect. 7 1
532 221.76 precipitation 0.1 43200 > th dose independent rect. 7 1
565 222.02 precipitation 0.1 43200 > th dose dependent rect. 2 2
581 222.15 humidity 90.0 14400 > th dose independent rect. 23 2
604 222.27 humidity 90.0 14400 > th dose independent sin 5 NA
605 222.28 precipitation 0.1 43200 < th dose independent rect. 7 1
606 222.28 precipitation 0.1 43200 < th dose dependent rect. 7 1
619 222.38 wind 1.0 14400 < th dose independent rect. 23 3
628 222.47 humidity 90.0 14400 > th dose independent rect. 23 8
635 222.54 wind 1.0 14400 < th dose dependent rect. 23 3
641 222.58 radiation 20.0 4320 > th dose dependent rect. 6 2
683 222.85 humidity 90.0 14400 < th dose dependent rect. 6 1
696 222.94 humidity 70.0 43200 > th dose dependent rect. 16 1
755 223.28 radiation 1.0 14400 > th dose independent sin 4 NA
760 223.32 radiation 1.0 14400 < th dose independent sin 4 NA
774 223.39 humidity 70.0 43200 < th dose independent sin 13 NA
786 223.46 humidity 70.0 43200 < th dose independent rect. 15 18
791 223.49 radiation 1.0 14400 > th dose independent rect. 18 14
802 223.55 radiation 1.0 14400 > th dose independent rect. 4 4
815 223.57 wind 1.0 14400 > th dose independent rect. 23 3
817 223.57 radiation 1.0 14400 < th dose independent rect. 19 13
819 223.58 radiation 1.0 14400 < th dose independent rect. 23 9
834 223.64 radiation 1.0 14400 < th dose independent rect. 4 4
851 223.75 humidity 70.0 43200 > th dose independent rect. 15 18
865 223.81 humidity 70.0 43200 > th dose independent sin 13 NA
866 223.81 radiation 1.0 14400 > th dose independent rect. 4 9
867 223.81 radiation 1.0 14400 < th dose independent rect. 4 9
878 223.81 humidity 70.0 43200 < th dose independent rect. 17 19
879 223.81 humidity 70.0 43200 < th dose independent rect. 15 21
932 223.95 humidity 70.0 43200 > th dose independent rect. 17 19
936 223.95 radiation 40.0 4320 < th dose dependent rect. 18 8