Os11g0225100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os11g0225100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.09 | 0.266 | 8.89 | 1.77 | 0.623 | -0.998 | -0.522 | 2.12 | 0.667 | 23.5 | 25.9 | 1065 | -- | -- |
| 36 | 0.279 | 8.93 | 1.21 | 0.625 | -0.812 | -0.397 | -- | 0.548 | 23.7 | 25.7 | 1017 | -- | -- |
| 33.14 | 0.268 | 8.89 | 1.75 | 0.619 | -1 | -- | 1.96 | 0.651 | 23.5 | 25.9 | 1086 | -- | -- |
| 35.66 | 0.278 | 8.96 | 1.23 | 0.633 | -0.838 | -- | -- | 0.494 | 23.3 | 25.8 | 1005 | -- | -- |
| 45.61 | 0.315 | 8.87 | 1.86 | -- | -0.853 | -- | 2.07 | 0.673 | -- | 25.7 | 1496 | -- | -- |
| 53.99 | 0.344 | 9.01 | 0.968 | 0.371 | -- | -0.31 | -- | 0.227 | 23.3 | -- | -- | -- | -- |
| 54.4 | 0.345 | 9.01 | 0.981 | 0.373 | -- | -- | -- | 0.229 | 23.3 | -- | -- | -- | -- |
| 49.27 | 0.327 | 8.96 | 1.27 | -- | -0.683 | -- | -- | 0.379 | -- | 26.4 | 5864 | -- | -- |
| 71.71 | 0.394 | 9 | -- | 0.576 | -0.502 | -- | -- | 0.285 | 23 | 25.48 | 887 | -- | -- |
| 63.09 | 0.371 | 9 | 0.99 | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
| 79.75 | 0.418 | 9.03 | -- | 0.383 | -- | -- | -- | 0.119 | 23.4 | -- | -- | -- | -- |
| 81.69 | 0.422 | 9 | -- | -- | -0.273 | -- | -- | 0.24 | -- | 25.48 | 887 | -- | -- |
| 88.94 | 0.44 | 9.02 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.15 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 19 |
| 3 | 34.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 4 | 34.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 19 | 34.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 22 | 34.41 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 33 | 34.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 59 | 34.58 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 17 |
| 85 | 34.66 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 152 | 34.85 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 153 | 34.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 243 | 35.00 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 23 |
| 249 | 35.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 250 | 35.02 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 23 |
| 272 | 35.06 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 23 |
| 293 | 35.10 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 315 | 35.13 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 327 | 35.16 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 388 | 35.26 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 433 | 35.33 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 23 |
| 467 | 35.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 479 | 35.40 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 23 |
| 563 | 35.49 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 23 |
| 571 | 35.51 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 577 | 35.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 615 | 35.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 630 | 35.59 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 23 |
| 706 | 35.69 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 23 |
| 713 | 35.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 719 | 35.70 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 732 | 35.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 797 | 35.76 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 23 |
| 862 | 35.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 900 | 35.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 924 | 35.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |