Os11g0225000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0225000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 498.75 | 1.05 | 5.02 | -2.93 | 0.819 | 2.87 | -0.907 | -3.09 | -0.395 | 4.68 | 19.69 | 2160 | -- | -- |
| 509.23 | 1.05 | 4.92 | -2.59 | 0.798 | 3.43 | -1.12 | -- | -0.3 | 4.78 | 19.2 | 2408 | -- | -- |
| 494.75 | 1.04 | 5.03 | -3.08 | 0.693 | 2.88 | -- | -3.17 | -0.398 | 4.35 | 19.5 | 2559 | -- | -- |
| 507.57 | 1.05 | 4.93 | -2.68 | 0.696 | 3.68 | -- | -- | -0.321 | 4.34 | 19.13 | 2577 | -- | -- |
| 521.69 | 1.06 | 5.04 | -3.11 | -- | 3.05 | -- | -3.02 | -0.43 | -- | 19.44 | 2559 | -- | -- |
| 733.82 | 1.27 | 4.76 | -0.891 | 0.883 | -- | -1.1 | -- | 0.437 | 3.91 | -- | -- | -- | -- |
| 737.29 | 1.27 | 4.76 | -0.876 | 0.875 | -- | -- | -- | 0.443 | 3.77 | -- | -- | -- | -- |
| 533.45 | 1.08 | 4.94 | -2.7 | -- | 3.79 | -- | -- | -0.324 | -- | 19.2 | 2577 | -- | -- |
| 650 | 1.19 | 4.8 | -- | 0.919 | 2.43 | -- | -- | 0.301 | 4.38 | 18.6 | 2077 | -- | -- |
| 779.52 | 1.3 | 4.76 | -0.84 | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
| 757.53 | 1.29 | 4.74 | -- | 0.858 | -- | -- | -- | 0.541 | 3.78 | -- | -- | -- | -- |
| 672.4 | 1.21 | 4.83 | -- | -- | 2.27 | -- | -- | 0.185 | -- | 19.4 | 2292 | -- | -- |
| 798.13 | 1.32 | 4.74 | -- | -- | -- | -- | -- | 0.56 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 492.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 2 | 492.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 4 | 492.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 7 | 493.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 11 | 493.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 12 | 493.70 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 17 | 494.03 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 40 | 495.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 49 | 495.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 72 | 496.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 76 | 496.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 78 | 496.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 89 | 497.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 107 | 497.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 125 | 498.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 169 | 500.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 177 | 500.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 223 | 502.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 540 | 514.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 550 | 514.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 561 | 515.31 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 580 | 516.43 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 629 | 519.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 640 | 519.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 651 | 520.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 658 | 521.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 688 | 523.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 703 | 523.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 712 | 523.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 737 | 524.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 740 | 524.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 784 | 525.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |