Os11g0223000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0223000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.17 | 0.699 | 3.53 | -0.217 | 0.501 | 1.28 | 0.185 | -2.85 | 0.116 | 12.7 | 30.05 | 69 | -- | -- |
| 226.42 | 0.701 | 3.53 | -0.217 | 0.501 | 1.28 | 0.185 | -- | 0.116 | 12 | 30.05 | 69 | -- | -- |
| 221.3 | 0.693 | 3.53 | -0.198 | 0.5 | 1.26 | -- | -2.69 | 0.12 | 12.7 | 30.1 | 64 | -- | -- |
| 222.82 | 0.695 | 3.49 | 0.0269 | 0.518 | 1.03 | -- | -- | 0.139 | 12.7 | 30 | 70 | -- | -- |
| 235.96 | 0.715 | 3.54 | -0.232 | -- | 1.44 | -- | -2.75 | 0.127 | -- | 30.1 | 65 | -- | -- |
| 247.04 | 0.737 | 3.52 | 0.143 | 0.723 | -- | 0.413 | -- | 0.0637 | 13.9 | -- | -- | -- | -- |
| 247.7 | 0.737 | 3.52 | 0.156 | 0.723 | -- | -- | -- | 0.066 | 13.9 | -- | -- | -- | -- |
| 237.7 | 0.718 | 3.51 | -0.019 | -- | 1.13 | -- | -- | 0.136 | -- | 30 | 63 | -- | -- |
| 222.55 | 0.695 | 3.51 | -- | 0.509 | 0.978 | -- | -- | 0.128 | 12.7 | 30.08 | 64 | -- | -- |
| 279.28 | 0.781 | 3.53 | 0.126 | -- | -- | -- | -- | 0.0494 | -- | -- | -- | -- | -- |
| 248.34 | 0.737 | 3.53 | -- | 0.72 | -- | -- | -- | 0.0487 | 13.9 | -- | -- | -- | -- |
| 237.7 | 0.718 | 3.51 | -- | -- | 1.13 | -- | -- | 0.135 | -- | 29.97 | 64 | -- | -- |
| 279.7 | 0.781 | 3.53 | -- | -- | -- | -- | -- | 0.0354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.03 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 23 |
| 5 | 219.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 9 | 220.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 11 | 220.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 17 | 220.63 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 17 |
| 26 | 220.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 31 | 221.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 33 | 221.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 48 | 221.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 59 | 221.92 | temperature | 30 | 90 | > th | dose independent | sin | 23 | NA |
| 69 | 222.10 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 21 |
| 71 | 222.11 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 10 |
| 104 | 222.39 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 105 | 222.40 | temperature | 30 | 90 | < th | dose independent | sin | 23 | NA |
| 109 | 222.44 | temperature | 30 | 90 | > th | dose independent | no | NA | NA |
| 222 | 222.56 | temperature | 30 | 90 | < th | dose independent | rect. | 16 | 23 |
| 224 | 222.58 | temperature | 30 | 270 | > th | dose independent | sin | 2 | NA |
| 230 | 222.68 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 23 |
| 235 | 222.73 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 241 | 222.79 | temperature | 30 | 90 | > th | dose independent | rect. | 15 | 23 |
| 243 | 222.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 249 | 222.98 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 343 | 223.63 | temperature | 30 | 30 | > th | dose independent | rect. | 13 | 23 |
| 348 | 223.65 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 23 |
| 353 | 223.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 471 | 223.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 490 | 223.93 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 498 | 223.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 499 | 223.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 502 | 223.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 8 |
| 508 | 224.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 14 |
| 515 | 224.02 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 525 | 224.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 564 | 224.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 570 | 224.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 579 | 224.33 | temperature | 30 | 4320 | < th | dose independent | sin | 5 | NA |
| 611 | 224.42 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 665 | 224.56 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 12 |
| 668 | 224.58 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 673 | 224.60 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 675 | 224.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 706 | 224.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 786 | 224.86 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 802 | 224.90 | temperature | 30 | 4320 | > th | dose independent | sin | 5 | NA |
| 905 | 225.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 922 | 225.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 923 | 225.16 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 958 | 225.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 959 | 225.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 961 | 225.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |