Os11g0220800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L10 (QM protein homolog).
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Os11g0220800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L10 (QM protein homolog).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.44 | 0.299 | 12.9 | 0.961 | 0.401 | 0.439 | 0.642 | -0.19 | 0.239 | 18.6 | 19.8 | 2736 | -- | -- |
| 40.51 | 0.296 | 12.9 | 0.982 | 0.393 | 0.47 | 0.642 | -- | 0.249 | 18.6 | 19.83 | 2708 | -- | -- |
| 41.46 | 0.3 | 12.9 | 0.946 | 0.406 | 0.436 | -- | -0.238 | 0.232 | 18.7 | 19.8 | 2749 | -- | -- |
| 41.55 | 0.3 | 12.9 | 0.975 | 0.403 | 0.485 | -- | -- | 0.243 | 18.7 | 19.9 | 2747 | -- | -- |
| 49.78 | 0.329 | 12.9 | 1 | -- | 0.43 | -- | -0.0592 | 0.238 | -- | 20.2 | 2128 | -- | -- |
| 44.78 | 0.314 | 12.9 | 1.24 | 0.39 | -- | 0.7 | -- | 0.361 | 18.7 | -- | -- | -- | -- |
| 46 | 0.318 | 12.9 | 1.23 | 0.392 | -- | -- | -- | 0.362 | 18.9 | -- | -- | -- | -- |
| 49.77 | 0.329 | 12.9 | 1.01 | -- | 0.45 | -- | -- | 0.249 | -- | 20.2 | 2115 | -- | -- |
| 47.42 | 0.321 | 13 | -- | 0.392 | 1.01 | -- | -- | -0.00363 | 18.8 | 18.1 | 47520 | -- | -- |
| 54.05 | 0.344 | 12.9 | 1.22 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 85.99 | 0.434 | 12.9 | -- | 0.378 | -- | -- | -- | 0.225 | 19.1 | -- | -- | -- | -- |
| 55.45 | 0.347 | 13 | -- | -- | 1 | -- | -- | -0.00895 | -- | 18.07 | 47520 | -- | -- |
| 93.54 | 0.451 | 12.9 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.02 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 38.17 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 3 | 38.66 | wind | 3 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 4 | 38.69 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 6 | 38.73 | wind | 3 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 7 | 38.80 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 14 | 38.94 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 19 | 39.02 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 23 | 39.06 | wind | 5 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 27 | 39.11 | wind | 3 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 34 | 39.18 | temperature | 20 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 39 | 39.23 | wind | 3 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 40 | 39.25 | wind | 5 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 43 | 39.30 | wind | 5 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 64 | 39.42 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 65 | 39.42 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 114 | 39.60 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 121 | 39.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 129 | 39.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 140 | 39.70 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 144 | 39.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 174 | 39.82 | wind | 3 | 4320 | < th | dose dependent | sin | 8 | NA |
| 190 | 39.87 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 203 | 39.90 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 210 | 39.90 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 211 | 39.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 219 | 39.92 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 224 | 39.92 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 230 | 39.93 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 231 | 39.93 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 253 | 39.95 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 264 | 39.96 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 277 | 39.97 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 298 | 39.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 311 | 39.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 358 | 40.03 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 369 | 40.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 392 | 40.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 412 | 40.06 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 431 | 40.07 | wind | 1 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 434 | 40.08 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 446 | 40.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 456 | 40.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 490 | 40.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 528 | 40.15 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 533 | 40.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 559 | 40.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 574 | 40.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 730 | 40.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 737 | 40.26 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 738 | 40.26 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 765 | 40.27 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 766 | 40.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 771 | 40.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 889 | 40.32 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 961 | 40.35 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 971 | 40.35 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 2 |