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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0220400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0252) R2 : 0.00305
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0627 (0.0531) R2dN8 : 0.00394 R2N8 : 0.00305
σ : 0.475
deviance : 103.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.78 0.443 3.3 1.41 0.281 0.646 1.02 -5.04 0.173 15 30 1468 -- --
90.67 0.443 3.39 0.559 0.281 0.373 0.678 -- 0.226 14.7 20.78 5249 -- --
92.01 0.447 3.3 1.38 0.287 0.656 -- -5.02 0.172 14.1 29.98 1519 -- --
93.27 0.45 3.39 0.569 0.275 0.324 -- -- 0.209 14 20.1 5132 -- --
96.84 0.458 3.3 1.35 -- 0.639 -- -4.59 0.168 -- 30 1460 -- --
92.05 0.45 3.42 0.35 0.282 -- 0.971 -- 0.104 14.8 -- -- -- --
94.99 0.456 3.41 0.373 0.287 -- -- -- 0.109 13.8 -- -- -- --
97.9 0.461 3.39 0.584 -- 0.366 -- -- 0.203 -- 19.7 5225 -- --
98.23 0.462 3.42 -- 0.269 0.0956 -- -- 0.1 13.8 22.5 2241 -- --
99.99 0.467 3.42 0.361 -- -- -- -- 0.103 -- -- -- -- --
98.65 0.465 3.42 -- 0.281 -- -- -- 0.0678 13.8 -- -- -- --
102.6 0.472 3.42 -- -- 0.139 -- -- 0.109 -- 22.58 2347 -- --
103.43 0.475 3.43 -- -- -- -- -- 0.0627 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.97 radiation 1.0 43200 < th dose dependent rect. 3 1
2 81.82 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 81.96 atmosphere 1005.0 90 > th dose dependent rect. 2 1
9 82.35 radiation 1.0 4320 < th dose dependent rect. 3 1
10 82.36 wind 9.0 1440 < th dose independent rect. 3 1
11 82.36 temperature 10.0 1440 > th dose independent rect. 3 1
14 82.36 temperature 30.0 1440 < th dose independent rect. 3 1
18 82.36 humidity 50.0 1440 > th dose independent rect. 3 1
27 82.36 atmosphere 995.0 1440 > th dose independent rect. 3 1
28 82.36 radiation 1.0 1440 < th dose independent rect. 3 1
48 82.36 temperature 10.0 1440 > th dose independent rect. 4 23
64 82.39 temperature 20.0 30 > th dose dependent rect. 2 1
66 82.43 temperature 20.0 30 > th dose independent rect. 2 1
68 82.47 atmosphere 1005.0 30 > th dose independent rect. 2 1
72 82.51 wind 3.0 30 < th dose independent rect. 2 1
76 82.53 wind 3.0 30 < th dose dependent rect. 2 1
84 82.58 humidity 80.0 30 > th dose independent rect. 2 1
87 82.59 temperature 10.0 30 > th dose independent rect. 2 1
89 82.59 temperature 30.0 30 < th dose independent rect. 2 1
90 82.59 humidity 50.0 30 > th dose independent rect. 2 1
94 82.59 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 82.59 radiation 1.0 30 < th dose independent rect. 2 1
101 82.59 precipitation 0.1 30 < th dose independent rect. 2 1
102 82.59 temperature 10.0 30 > th dose independent rect. 3 23
104 82.59 humidity 50.0 30 > th dose dependent rect. 2 1
107 82.59 radiation 1.0 30 < th dose dependent rect. 2 1
112 82.59 precipitation 0.1 30 < th dose dependent rect. 2 1
121 82.75 atmosphere 1015.0 30 < th dose dependent rect. 2 1
124 82.84 wind 1.0 30 > th dose independent rect. 2 1
125 82.84 temperature 30.0 30 < th dose dependent rect. 2 1
127 82.92 precipitation 0.1 30 < th dose independent rect. 3 23
129 82.92 precipitation 0.1 30 < th dose dependent rect. 3 23
183 83.83 wind 9.0 30 < th dose independent rect. 3 23
188 84.23 humidity 50.0 10 > th dose independent rect. 3 23
236 85.36 humidity 90.0 90 < th dose independent rect. 2 1
242 85.57 radiation 40.0 30 < th dose dependent rect. 3 23
243 85.59 temperature 20.0 720 > th dose dependent rect. 8 1
256 86.01 radiation 30.0 30 < th dose independent rect. 3 23
262 86.26 radiation 10.0 30 < th dose independent rect. 3 23
266 86.31 temperature 10.0 30 > th dose dependent rect. 3 23
267 86.32 radiation 10.0 30 > th dose independent rect. 7 1
271 86.39 humidity 80.0 10 < th dose independent rect. 6 2
277 86.52 humidity 80.0 10 < th dose independent rect. 23 9
287 86.56 radiation 1.0 1440 < th dose dependent rect. 21 1
307 86.77 humidity 90.0 90 < th dose independent rect. 1 3
313 86.80 radiation 30.0 10 > th dose dependent rect. 15 17
318 86.84 humidity 50.0 30 > th dose dependent rect. 3 23
325 86.92 temperature 25.0 720 > th dose independent rect. 8 1
352 87.09 temperature 25.0 270 > th dose independent rect. 23 4
354 87.09 wind 1.0 10 > th dose independent rect. 8 23
361 87.14 temperature 25.0 720 > th dose independent rect. 3 6
364 87.15 temperature 10.0 30 > th dose dependent rect. 8 12
396 87.23 temperature 25.0 720 < th dose independent rect. 3 9
398 87.23 temperature 25.0 90 > th dose dependent rect. 15 22
400 87.24 radiation 10.0 10 > th dose independent rect. 11 21
412 87.31 radiation 30.0 10 > th dose dependent rect. 15 1
431 87.33 temperature 25.0 720 > th dose dependent rect. 3 6
454 87.41 radiation 30.0 10 > th dose independent rect. 15 17
469 87.47 temperature 25.0 270 > th dose dependent rect. 23 4
471 87.48 atmosphere 1015.0 30 < th dose independent rect. 3 23
475 87.50 radiation 30.0 10 > th dose independent rect. 15 1
498 87.52 humidity 50.0 90 > th dose independent rect. 3 10
499 87.52 wind 1.0 10 > th dose independent rect. 21 23
526 87.63 temperature 25.0 270 > th dose independent rect. 3 15
527 87.63 radiation 10.0 10 > th dose independent rect. 14 18
544 87.72 wind 7.0 14400 < th dose independent rect. 9 1
561 87.77 temperature 25.0 720 < th dose dependent rect. 24 7
583 87.83 temperature 25.0 720 < th dose dependent rect. 3 4
620 87.88 temperature 25.0 720 < th dose dependent rect. 3 2
627 87.89 humidity 70.0 10 > th dose independent rect. 3 23
650 87.95 temperature 20.0 720 < th dose independent rect. 3 3
653 87.95 humidity 90.0 90 < th dose dependent rect. 24 17
666 87.97 temperature 20.0 270 > th dose dependent rect. 3 16
676 88.00 temperature 20.0 720 < th dose independent rect. 1 5
678 88.00 wind 9.0 10 < th dose dependent rect. 20 12
693 88.04 radiation 40.0 10 < th dose dependent rect. 21 23
703 88.06 wind 1.0 10 > th dose independent rect. 17 14
737 88.10 humidity 50.0 90 > th dose dependent rect. 3 10
739 88.10 radiation 30.0 10 < th dose dependent rect. 8 16
782 88.14 radiation 10.0 30 < th dose independent rect. 21 23
799 88.15 temperature 20.0 270 > th dose dependent rect. 3 19
800 88.16 wind 3.0 720 < th dose independent rect. 2 1
803 88.16 temperature 25.0 720 < th dose dependent sin 8 NA
805 88.17 humidity 50.0 10 > th dose independent rect. 4 10
904 88.27 wind 1.0 10 > th dose independent rect. 16 19
909 88.28 humidity 90.0 270 < th dose independent rect. 23 16
929 88.30 wind 7.0 14400 > th dose independent rect. 9 1
932 88.30 temperature 30.0 1440 < th dose independent rect. 14 21
964 88.33 radiation 20.0 10 < th dose independent rect. 8 16
978 88.34 wind 1.0 10 < th dose independent rect. 15 12
991 88.35 wind 1.0 10 < th dose independent rect. 17 10
997 88.35 humidity 90.0 30 < th dose dependent rect. 20 1