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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0220100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0335) R2 : 0.296
β1 : 0.796 (0.121) R2dD : 0.0688 R2D : 0.0318
β2 : 0.553 (0.0848) R2dC : 0.0663 R2C : 0.0426
β3 : 1.99 (0.23) R2dE : 0.124 R2E : 0.134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.361 (0.073) R2dN8 : 0.0537 R2N8 : 0.0545
σ : 0.625
deviance : 177.53
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_____
C
peak time of C : 19.8
E
wheather : temperature
threshold : 24.6
memory length : 13
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3
open length of G : 0.316

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.45 0.608 3.9 0.194 0.552 37.4 0.66 -211 0.325 19.7 25 90 1 0.999
203.49 0.669 3.79 0.811 0.525 0.933 0.664 -- 0.513 20.6 25.23 55 1.97 0.858
168.66 0.605 3.9 0.179 0.554 37.4 -- -211 0.327 19.6 25.02 91 1 1
177.53 0.625 3.83 0.796 0.553 1.99 -- -- 0.361 19.8 24.6 13 3 0.316
185.12 0.634 3.89 0.184 -- 37.4 -- -211 0.341 -- 25.03 91 1 1.01
204.35 0.67 3.8 0.816 0.527 -- 0.664 -- 0.511 20.7 -- -- -- --
205.79 0.672 3.8 0.794 0.524 -- -- -- 0.511 20.8 -- -- -- --
194.08 0.652 3.81 0.79 -- 1.92 -- -- 0.358 -- 24.6 13 3 0.316
194.23 0.653 3.85 -- 0.548 1.99 -- -- 0.272 19.9 24.59 16 2.98 0.23
221.36 0.695 3.78 0.793 -- -- -- -- 0.507 -- -- -- -- --
222.41 0.698 3.82 -- 0.522 -- -- -- 0.422 20.9 -- -- -- --
210.53 0.678 3.83 -- -- 1.93 -- -- 0.27 -- 24.6 13 3 0.316
237.96 0.72 3.8 -- -- -- -- -- 0.419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.85 radiation 1.0 43200 < th dose dependent rect. 3 1
3 167.45 temperature 25.0 90 > th dose dependent rect. 1 1
7 168.09 wind 3.0 30 < th dose dependent rect. 2 1
11 168.15 wind 1.0 30 < th dose independent rect. 2 1
14 168.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
20 168.35 atmosphere 1005.0 30 > th dose independent rect. 2 1
25 168.38 wind 9.0 1440 < th dose independent rect. 3 1
26 168.38 temperature 10.0 1440 > th dose independent rect. 3 1
29 168.38 temperature 30.0 1440 < th dose independent rect. 3 1
33 168.38 humidity 50.0 1440 > th dose independent rect. 3 1
42 168.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
43 168.38 radiation 1.0 1440 < th dose independent rect. 3 1
63 168.38 temperature 10.0 1440 > th dose independent rect. 4 23
72 168.42 temperature 20.0 30 > th dose independent rect. 2 1
81 168.72 humidity 90.0 30 > th dose independent rect. 2 1
85 168.81 humidity 70.0 30 > th dose dependent rect. 2 1
90 168.87 temperature 10.0 30 > th dose independent rect. 2 1
92 168.87 temperature 30.0 30 < th dose independent rect. 2 1
93 168.87 humidity 50.0 30 > th dose independent rect. 2 1
97 168.87 atmosphere 1010.0 30 < th dose independent rect. 2 1
99 168.87 radiation 1.0 30 < th dose independent rect. 2 1
104 168.87 precipitation 0.1 30 < th dose independent rect. 2 1
105 168.87 temperature 10.0 30 > th dose independent rect. 3 23
106 168.87 radiation 1.0 30 < th dose dependent rect. 2 1
111 168.87 precipitation 0.1 30 < th dose dependent rect. 2 1
117 169.19 atmosphere 995.0 30 > th dose independent rect. 3 23
121 169.53 atmosphere 1015.0 30 < th dose dependent rect. 2 1
124 169.97 temperature 30.0 30 < th dose dependent rect. 2 1
136 170.88 wind 1.0 30 > th dose independent rect. 2 1
145 171.52 precipitation 0.1 30 < th dose independent rect. 3 23
146 171.52 precipitation 0.1 30 < th dose dependent rect. 3 23
175 172.24 wind 9.0 30 < th dose independent rect. 3 23
199 179.28 temperature 25.0 270 > th dose dependent rect. 23 4
200 179.47 temperature 25.0 270 > th dose independent rect. 23 4
209 180.40 temperature 10.0 30 > th dose dependent rect. 3 23
217 181.20 humidity 50.0 30 > th dose independent rect. 3 23
228 182.07 wind 1.0 30 < th dose independent rect. 24 3
265 182.95 wind 1.0 10 < th dose independent rect. 11 16
282 184.07 wind 1.0 10 < th dose independent rect. 22 5
291 184.15 wind 3.0 30 < th dose dependent rect. 24 3
311 185.05 humidity 90.0 90 < th dose independent rect. 2 1
314 185.26 atmosphere 1015.0 30 < th dose independent rect. 3 23
373 188.04 temperature 20.0 720 > th dose dependent rect. 3 4
376 188.07 wind 1.0 10 > th dose independent sin 16 NA
381 188.17 temperature 10.0 720 > th dose dependent rect. 3 4
395 188.43 temperature 30.0 30 < th dose independent rect. 3 23
507 190.17 temperature 10.0 720 > th dose dependent rect. 3 12
517 190.35 wind 3.0 10 < th dose dependent rect. 9 18
518 190.36 atmosphere 1015.0 1440 < th dose independent rect. 3 1
553 190.78 wind 1.0 10 < th dose independent sin 17 NA
578 191.02 temperature 30.0 90 < th dose independent rect. 13 14
600 191.25 temperature 30.0 90 < th dose independent rect. 15 12
601 191.25 humidity 50.0 720 > th dose independent rect. 15 19
608 191.37 wind 1.0 30 > th dose independent rect. 3 23
619 191.49 humidity 50.0 720 > th dose independent rect. 15 12
622 191.55 wind 5.0 14400 > th dose independent rect. 11 5
644 191.72 wind 5.0 14400 < th dose independent rect. 11 5
661 191.85 temperature 30.0 10 < th dose independent rect. 9 19
673 191.90 temperature 10.0 270 > th dose dependent rect. 10 12
690 192.00 wind 5.0 14400 > th dose independent rect. 15 1
704 192.08 temperature 10.0 720 > th dose dependent rect. 10 5
707 192.11 radiation 40.0 30 < th dose dependent rect. 9 18
711 192.13 temperature 30.0 10 < th dose dependent rect. 9 11
721 192.18 temperature 25.0 10 > th dose dependent rect. 12 21
751 192.39 wind 9.0 720 < th dose independent rect. 15 19
756 192.40 wind 3.0 10 < th dose dependent rect. 11 16
770 192.47 wind 9.0 720 < th dose independent rect. 15 12
774 192.51 humidity 70.0 30 > th dose independent rect. 9 19
787 192.58 temperature 25.0 10 > th dose dependent rect. 10 23
791 192.60 wind 5.0 14400 < th dose independent rect. 15 1
838 192.71 temperature 30.0 720 < th dose independent rect. 15 1
844 192.73 radiation 10.0 90 < th dose dependent rect. 9 18
845 192.74 wind 1.0 30 < th dose dependent rect. 22 5
848 192.76 atmosphere 995.0 720 > th dose independent rect. 10 5
871 192.84 wind 1.0 30 < th dose dependent rect. 17 10
885 192.87 atmosphere 995.0 720 > th dose independent rect. 3 12
901 192.92 humidity 50.0 720 > th dose independent rect. 15 4
913 192.96 temperature 20.0 720 > th dose independent rect. 3 4
952 193.08 wind 1.0 30 > th dose dependent rect. 2 1
955 193.09 radiation 40.0 90 < th dose dependent rect. 13 14
970 193.15 humidity 90.0 270 < th dose independent rect. 23 4
974 193.16 temperature 30.0 720 < th dose independent rect. 15 21
975 193.16 wind 5.0 14400 > th dose dependent rect. 15 1
990 193.21 wind 1.0 10 > th dose independent rect. 10 23