Os11g0219000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0219000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.45 | 0.327 | 11.3 | -1.04 | 0.269 | -0.716 | 0.4 | 0.792 | -0.568 | 7.03 | 88.52 | 309 | -- | -- |
| 49.33 | 0.327 | 11.3 | -1.01 | 0.287 | -0.71 | 0.778 | -- | -0.57 | 6.43 | 87.91 | 318 | -- | -- |
| 48.74 | 0.325 | 11.3 | -1.04 | 0.275 | -0.716 | -- | 0.921 | -0.576 | 7.34 | 88.23 | 318 | -- | -- |
| 50.69 | 0.332 | 11.3 | -0.995 | 0.265 | -0.645 | -- | -- | -0.558 | 7.48 | 87.67 | 328 | -- | -- |
| 51.16 | 0.333 | 11.3 | -1.06 | -- | -0.528 | -- | 1.07 | -0.538 | -- | 89.12 | 262 | -- | -- |
| 58.69 | 0.359 | 11.3 | -1.06 | 0.166 | -- | -0.42 | -- | -0.449 | 15 | -- | -- | -- | -- |
| 59.12 | 0.36 | 11.3 | -1.07 | 0.168 | -- | -- | -- | -0.452 | 13.8 | -- | -- | -- | -- |
| 53.39 | 0.34 | 11.3 | -1.01 | -- | -0.499 | -- | -- | -0.537 | -- | 88.82 | 306 | -- | -- |
| 75.6 | 0.405 | 11.3 | -- | 0.369 | -0.882 | -- | -- | -0.477 | 7.76 | 87.65 | 399 | -- | -- |
| 60.83 | 0.364 | 11.3 | -1.08 | -- | -- | -- | -- | -0.456 | -- | -- | -- | -- | -- |
| 89.47 | 0.442 | 11.3 | -- | 0.188 | -- | -- | -- | -0.333 | 13.9 | -- | -- | -- | -- |
| 79.13 | 0.414 | 11.3 | -- | -- | -0.892 | -- | -- | -0.478 | -- | 82.4 | 1598 | -- | -- |
| 91.6 | 0.447 | 11.3 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.41 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 11 | 47.20 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 21 | 47.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 24 | 47.78 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 25 | 47.79 | humidity | 70.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 31 | 47.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 60 | 48.20 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 65 | 48.25 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 75 | 48.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 88 | 48.41 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 107 | 48.55 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 109 | 48.57 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 116 | 48.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 117 | 48.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 126 | 48.67 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 127 | 48.67 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 150 | 48.79 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 8 |
| 161 | 48.84 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 176 | 48.91 | humidity | 90.0 | 270 | < th | dose independent | sin | 7 | NA |
| 177 | 48.91 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 197 | 48.97 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 202 | 48.98 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 247 | 49.07 | humidity | 90.0 | 270 | < th | dose independent | rect. | 18 | 21 |
| 275 | 49.16 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 323 | 49.30 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 348 | 49.35 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 356 | 49.36 | humidity | 80.0 | 90 | > th | dose independent | sin | 5 | NA |
| 368 | 49.38 | precipitation | 0.1 | 720 | < th | dose independent | sin | 10 | NA |
| 370 | 49.38 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 10 | NA |
| 371 | 49.38 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 388 | 49.42 | precipitation | 0.1 | 270 | < th | dose independent | sin | 7 | NA |
| 389 | 49.42 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 7 | NA |
| 394 | 49.43 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 397 | 49.43 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 18 |
| 406 | 49.44 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 410 | 49.45 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 417 | 49.46 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 432 | 49.49 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 468 | 49.56 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 479 | 49.58 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 481 | 49.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 485 | 49.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 502 | 49.62 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 503 | 49.62 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 542 | 49.67 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 548 | 49.68 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 21 |
| 595 | 49.75 | precipitation | 0.1 | 720 | > th | dose independent | sin | 10 | NA |
| 629 | 49.79 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 637 | 49.80 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 645 | 49.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 16 |
| 674 | 49.86 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 10 |
| 710 | 49.89 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 14 |
| 814 | 49.98 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 9 |
| 823 | 49.98 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 833 | 49.99 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 839 | 49.99 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 851 | 50.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 868 | 50.00 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 879 | 50.01 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 8 |
| 895 | 50.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 910 | 50.03 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 950 | 50.06 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 963 | 50.07 | humidity | 90.0 | 270 | > th | dose independent | rect. | 2 | 23 |