Os11g0218600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0218600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.9 | 0.381 | 9.07 | 0.287 | 0.803 | -0.406 | 0.555 | -1.59 | 0.273 | 15.2 | 30 | 10 | -- | -- |
| 68.36 | 0.388 | 9.1 | 0.0196 | 0.825 | -0.37 | 1.11 | -- | 0.206 | 15.2 | 30 | 10 | -- | -- |
| 66.77 | 0.381 | 9.07 | 0.344 | 0.808 | -0.378 | -- | -1.82 | 0.306 | 15.2 | 30 | 9 | -- | -- |
| 72.29 | 0.399 | 9.1 | 0.0313 | 0.815 | -0.435 | -- | -- | 0.208 | 15.3 | 31.1 | 9 | -- | -- |
| 91.39 | 0.448 | 9.09 | 0.207 | -- | -1.17 | -- | -2.27 | 0.148 | -- | 30.3 | 28 | -- | -- |
| 70.22 | 0.393 | 9.09 | 0.104 | 0.947 | -- | 1.17 | -- | 0.277 | 15 | -- | -- | -- | -- |
| 74.71 | 0.405 | 9.09 | 0.129 | 0.954 | -- | -- | -- | 0.284 | 15.1 | -- | -- | -- | -- |
| 98.03 | 0.461 | 9.13 | -0.176 | -- | -1.23 | -- | -- | 0.0724 | -- | 31.9 | 74 | -- | -- |
| 72.31 | 0.398 | 9.1 | -- | 0.811 | -0.448 | -- | -- | 0.202 | 15.3 | 31.1 | 9 | -- | -- |
| 126.58 | 0.526 | 9.09 | 0.0888 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 75.15 | 0.406 | 9.09 | -- | 0.952 | -- | -- | -- | 0.27 | 15.1 | -- | -- | -- | -- |
| 98.84 | 0.463 | 9.13 | -- | -- | -1.23 | -- | -- | 0.0887 | -- | 32.19 | 74 | -- | -- |
| 126.78 | 0.526 | 9.09 | -- | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.22 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 59.46 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 7 | 61.87 | wind | 1 | 30 | < th | dose dependent | rect. | 22 | 4 |
| 17 | 63.14 | wind | 1 | 30 | < th | dose dependent | rect. | 14 | 12 |
| 21 | 63.31 | wind | 1 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 26 | 63.45 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 49 | 63.89 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 74 | 64.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 76 | 64.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 78 | 64.10 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 94 | 64.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 100 | 64.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 115 | 64.31 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 12 |
| 119 | 64.33 | wind | 1 | 10 | < th | dose independent | rect. | 22 | 4 |
| 120 | 64.33 | wind | 1 | 10 | < th | dose independent | rect. | 17 | 9 |
| 125 | 64.35 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 133 | 64.36 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 143 | 64.38 | wind | 1 | 10 | < th | dose independent | rect. | 11 | 15 |
| 147 | 64.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 148 | 64.39 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 157 | 64.41 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 169 | 64.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 174 | 64.43 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 13 | NA |
| 198 | 64.46 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 210 | 64.48 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 13 | NA |
| 231 | 64.50 | wind | 7 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 238 | 64.50 | wind | 7 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 317 | 64.57 | wind | 1 | 270 | < th | dose dependent | rect. | 9 | 17 |
| 363 | 64.63 | humidity | 80 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 422 | 64.70 | humidity | 90 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 424 | 64.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 446 | 64.73 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 459 | 64.75 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 521 | 64.81 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 539 | 64.83 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 545 | 64.83 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 548 | 64.83 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 596 | 64.86 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 604 | 64.87 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 612 | 64.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 690 | 64.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 800 | 64.99 | humidity | 90 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 817 | 65.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 827 | 65.01 | humidity | 90 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 841 | 65.02 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 10 |
| 851 | 65.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 887 | 65.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 889 | 65.05 | humidity | 90 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 938 | 65.08 | wind | 1 | 270 | < th | dose independent | rect. | 18 | 6 |
| 948 | 65.09 | wind | 9 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 976 | 65.11 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 10 |
| 981 | 65.11 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 17 |