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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0218200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.0421) R2 : 0.202
β1 : 0.994 (0.162) R2dD : 0.0778 R2D : -0.00494
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.32 (0.229) R2dE : 0.219 R2E : 0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.0941) R2dN8 : 0.0108 R2N8 : -0.0243
σ : 0.776
deviance : 277.55
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.53
memory length : 539
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
272.66 0.776 3.71 1.08 0.0749 2.02 1.43 -1.07 0.23 7.56 23.11 544 -- --
273.47 0.77 3.72 1.01 0.0517 2.32 1.18 -- 0.221 7.55 22.66 547 -- --
277.28 0.776 3.73 0.996 0.0714 2.28 -- -0.106 0.19 6.72 22.57 539 -- --
277.27 0.776 3.73 0.988 0.0745 2.3 -- -- 0.185 6.28 22.51 539 -- --
277.55 0.776 3.73 0.997 -- 2.31 -- -0.0281 0.191 -- 22.54 539 -- --
333.11 0.856 3.8 0.407 0.26 -- 1.09 -- -0.135 7.72 -- -- -- --
336.46 0.859 3.8 0.435 0.259 -- -- -- -0.136 7.95 -- -- -- --
277.55 0.776 3.73 0.994 -- 2.32 -- -- 0.19 -- 22.53 539 -- --
299.76 0.806 3.77 -- 0.119 1.78 -- -- 0.023 6.55 22.75 523 -- --
340.13 0.862 3.81 0.438 -- -- -- -- -0.132 -- -- -- -- --
341.46 0.864 3.81 -- 0.262 -- -- -- -0.184 7.84 -- -- -- --
300.47 0.807 3.77 -- -- 1.81 -- -- 0.0341 -- 22.8 530 -- --
345.19 0.867 3.82 -- -- -- -- -- -0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 268.29 temperature 10 720 > th dose dependent rect. 19 16
3 269.27 temperature 10 720 > th dose dependent sin 10 NA
7 269.77 temperature 30 720 < th dose dependent rect. 18 17
10 270.20 temperature 30 720 < th dose dependent sin 10 NA
121 274.28 temperature 30 720 < th dose dependent rect. 21 9
131 274.53 wind 7 43200 > th dose dependent rect. 20 1
140 274.75 temperature 25 270 < th dose dependent rect. 1 21
144 274.86 temperature 25 270 < th dose dependent sin 6 NA
146 274.89 wind 9 43200 > th dose dependent rect. 17 13
148 274.95 wind 9 43200 > th dose dependent rect. 17 7
159 275.16 wind 9 43200 > th dose dependent rect. 17 10
174 275.39 wind 7 43200 > th dose independent rect. 20 1
177 275.43 wind 9 43200 > th dose dependent rect. 17 4
195 275.75 temperature 10 720 > th dose dependent rect. 23 8
212 276.00 wind 7 43200 < th dose independent rect. 20 1
247 276.66 temperature 15 90 > th dose dependent rect. 23 23
251 276.77 temperature 25 720 < th dose dependent no NA NA
256 276.85 temperature 25 720 < th dose dependent rect. 7 23
262 276.93 temperature 15 10 > th dose dependent rect. 23 23
314 277.67 humidity 90 14400 > th dose dependent rect. 21 1
323 277.82 temperature 25 720 < th dose dependent rect. 5 23
331 277.97 temperature 25 720 < th dose dependent rect. 3 23
335 278.07 wind 9 43200 > th dose dependent sin 14 NA
343 278.15 wind 9 43200 > th dose independent rect. 17 14
345 278.15 temperature 10 720 > th dose dependent rect. 19 23
409 278.84 wind 9 43200 > th dose independent rect. 17 10
434 279.11 wind 9 43200 > th dose independent rect. 17 7
510 280.05 wind 9 43200 < th dose independent rect. 17 14
543 280.38 wind 9 43200 > th dose independent sin 12 NA
554 280.48 temperature 20 720 > th dose independent rect. 19 16
558 280.50 temperature 20 720 > th dose independent rect. 19 18
574 280.67 temperature 20 720 > th dose independent rect. 19 23
590 280.79 wind 9 43200 < th dose independent rect. 17 10
592 280.81 temperature 10 1440 > th dose dependent rect. 5 4
598 280.85 temperature 30 1440 < th dose dependent rect. 6 3
612 280.95 temperature 30 10 < th dose dependent rect. 3 23
623 281.03 temperature 20 720 < th dose independent rect. 19 19
650 281.24 wind 9 43200 < th dose independent rect. 17 7
655 281.26 temperature 10 720 > th dose dependent no NA NA
656 281.26 temperature 15 720 > th dose dependent rect. 23 23
661 281.28 temperature 20 720 > th dose independent rect. 19 21
696 281.47 temperature 30 10 < th dose dependent rect. 18 19
703 281.52 wind 7 43200 < th dose independent rect. 18 3
705 281.52 wind 9 43200 > th dose dependent rect. 20 3
710 281.54 temperature 30 1440 < th dose dependent rect. 1 8
715 281.56 temperature 25 270 < th dose dependent rect. 2 10
730 281.63 wind 9 43200 < th dose independent sin 12 NA
790 281.79 temperature 30 10 < th dose dependent rect. 14 23
812 281.88 wind 7 43200 > th dose independent rect. 18 3
849 281.99 temperature 30 10 < th dose dependent rect. 16 21
882 282.08 temperature 30 30 < th dose dependent rect. 7 23
923 282.19 wind 9 43200 > th dose dependent sin 17 NA
941 282.22 temperature 20 720 > th dose independent rect. 17 20
958 282.27 humidity 90 14400 > th dose independent rect. 21 1